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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgatttttatttatctgcttgcactccatcctttgtccatcatccaatgaattgcaaaccgtttgcattaactattctgtgttctatgatagaagtaaactgtgtaattatgtctgtgtttaccttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGTTTAGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGA

Basic information

species Vitis vinifera
transcript Vv07s0005g02620.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os12g25710.3 (Oryza sativa), 3'ss of exon 7
gtacttgatttttatttatctgcttgcactccatcctttgtccatcatccaatgaattgcaaaccgtttgcattaactattctgtgttctatgatagaagtaaactgtgtaattatgtctgtgtttaccttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGTTTAGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGA
                |||     || | |   | |||  | |  || || || | ||         || |  | |  |    | || ||    ||    || | |  ||||| ||     | ||  | | ||| |||||||| ||||||||||| || |||||| |||| || ||||| ||||||||| | |||||||| |||||||| ||||||||||| || ||||| ||||| |
---------------gtattaatatgaaatgtttgcttcattc--cacccgattagtttttctgtagttaccctgatgaagaagagtact----tatctttatatttagtaataataaa-attttatcatatttgcagGCCTTCATTCCAAACACAGGACGTGGTGTACAAGGGGCAACATCACATTGTCTTGGTCAAAACTTTGCAAAGATGTTTGATATCACTTTTGAGAATGATA

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G094123_T01 (Zea mays), 3'ss of exon 7
gtacttgatttttatttatctgcttgcactccatcctttgtccatcatccaatgaattgcaaaccgtttgcattaactattctgtgttctatgatagaagtaaactgtgtaattatgtctgtgtttaccttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGTTTAGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGA
||| |||||   |   ||     ||| |  |  |||||      | | |  |||||    |||  |     ||||| |   | || || |||  ||           | |  || |  ||   | |   ||||  |||||||| |||||||||||||||||||| ||||| || ||||| ||||| ||| | |||||||| ||||| || ||||||||||| || ||||| |||||||
gta-ttgatacattcctaaaatattgtagcctttccttaac---taacctgatgaa----aaaagg---aaattaatt--ccagtattttattgtaa----------tatgcttgttgctaaatat-tgttttaccagGCCTTCATTCCAAACACTGGTCGTGGCATACAAGGCGCAACCTCACACTGTCTTGGTCAAAACTTTGCCAAGATGTTTGATATCACTTTTGAGAATGAGA

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G38340.1 (Glycine max), 3'ss of exon 8
gtacttgatttttatttatctgcttgcactccatcctttgtccatcatccaatgaattgcaaaccgtttgcattaactattctgtgttctatgatagaagtaaactgtgta-attatgtctgtgtttaccttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGTTTAGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGA
                                                   ||   ||  |||   || |||| |||  |  | || | | | |  |  |||| |||  || |  || |   |||| |  |||  | |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| |||| |||||||||||| |
-------------------------------------------------gtatatgtttgaaattatt-gcataaacactgttatgctattttaatggtgtaagctgcttataaaattttgatgttcaattttgct-agGCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAA

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G40930.4 (Glycine max), 3'ss of exon 8
gtacttgatttttatttatctgcttgcactccatcctttgtccatcatccaatgaattgcaaaccgtttgcattaactattctgtgttctatgatagaagtaaactgtgta-attatgtctgtgtttaccttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGTTTAGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGA
                                                    |  ||  |  |    |||||| |||  ||  ||||| | | |  |  |||| |||  || |  || |   |||| |  |||  | |||| |||||||||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| ||||||||||| |||| |||||||||||| |
---------------------------------------------------gtatatgtctgatt-cttgcataaacagtt--gtgttattttaatggtgtaagctgcttataaaattttgatgttcaattttgct-agGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAA

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G62120.1 (Arabidopsis thaliana), 3'ss of exon 7
gtacttgatttttatttatctgcttgcactccatcctttgtccatcatccaatgaattgcaaaccgtttgcattaactattctgtgttctatgatagaagtaaactgtgtaattatgtctgtgtttaccttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGTTTAGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGA
                                                         || || |  ||||   | |  | |     || | |  |    ||  ||| | |  | | ||     |||   ||| |  |||| || ||||||||||||||||||||| |||| |||||||| || |||||||| || ||||| ||||| || |||||||| || | |||||| |||||||
------------------------------------------------------gtatgtaatctttttgttctgag-acttaaccttttttcttgtgggtttactctctg-tgaagttgaactttgattttat--agGCTTTCATTCCAAACACTGGTCGTGGTGTACAAGGTGCAACCTCTCATTGTTTGGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110427116|gb|EC993547.1|EC993547
EST:     AGAGTGAGATGGAGAAGTTTGCTGGTGGATTTTACACAACAAGTGTTGAG                         GCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGT
genomic: AGAGTGAGATGGAGAAGTTTGCTGGTGGATTTTACACAACAAGTGTTGAGgtacttgatt ... cttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGT
EST: gi|26263859|gb|CA814922.1|CA814922
EST:     CGAGTGAGATGGAGAAGTTTGCTGGTGGATTTTACACAACAAGTGTTGAG                         GCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGT
genomic: AGAGTGAGATGGAGAAGTTTGCTGGTGGATTTTACACAACAAGTGTTGAGgtacttgatt ... cttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGT
EST: gi|110713336|gb|EE089170.1|EE089170
EST:     AGAGTGAGATGGAGAAGTTTGCTGGTGGATTTTACACAACAAGTGTTGAG                         GCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCGCATTGT
genomic: AGAGTGAGATGGAGAAGTTTGCTGGTGGATTTTACACAACAAGTGTTGAGgtacttgatt ... cttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGT
EST: gi|26265772|gb|CA816835.1|CA816835
EST:     AGAGTGAGATGGAGAAGTTTGCTGGTGGATTTTACACAACAAGTGTTGAG                         GCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGT
genomic: AGAGTGAGATGGAGAAGTTTGCTGGTGGATTTTACACAACAAGTGTTGAGgtacttgatt ... cttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttctatgatagaagtaaactgtgtaattatgtctgtgtttaccttttttcagGCCTTTATTCCAAACACTGGTCGTGGTATACAGGGTGCAACTTCACATTGTTTAGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGA
                                      tgtttaccttttttc  CT-rich tract
                        tgtaattat  TA-rich tract