1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtggtgacagggttgggtggattttcatgcaagctgtatattctccgtggttttttgtttttggattgtatctaatacctcaatttcttttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTCATTAATCCTAATGCAAAGGATCCACTTGTTTTGGGTGTGAGAGTATGGC
species | Vitis vinifera |
transcript | Vv07s0005g02540.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCTCTTGAACTACATTGGAGGGGCTACTAATCCTGGAATTTTGTCCAAG ACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATGTGAGGAAGATGCTCEST: gi|352782140|gb|FQ470042.1|FQ470042
genomic: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAGgtaaggcagc ... ttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTC
EST: TGCTCTTGAACTACATAGGAGGGGCTACCAATCCTGGAATTTTGTCCAAG ACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTCEST: gi|352782116|gb|FQ470018.1|FQ470018
genomic: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAGgtaaggcagc ... ttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTC
EST: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAG ACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTCEST: gi|352764040|gb|FQ467610.1|FQ467610
genomic: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAGgtaaggcagc ... ttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTC
EST: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAG ACAGAGAGTGAACTTGTGGAAGCCGTAGACAGAGATTTGAGGAAGATGCTCEST: gi|352764188|gb|FQ471168.1|FQ471168
genomic: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAGgtaaggcagc ... ttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTC
EST: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAG ACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTCEST: gi|351054509|gb|FQ451985.1|FQ451985
genomic: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAGgtaaggcagc ... ttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTC
EST: TGCTCTTGAACTACATTGGAGGGGCTACTAATCCTGGAATTTTGTCCAAG ACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTCEST: gi|110378936|gb|EC944096.1|EC944096
genomic: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAGgtaaggcagc ... ttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTC
EST: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAG ACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTC
genomic: TGCTCTTGAACTACATTGGAGGGGCTACCAATCCTGGAATTTTGTCCAAGgtaaggcagc ... ttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTC
ccgtggttttttgtttttggattgtatctaatacctcaatttcttttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTCATTAATCCTAATGCAAAGGATCCACTTGTTTTGGGTGTGAGAGTATGGC
ttttaac putative branch site (score: 2)
cctcaatttctttt CT-rich tract
tcaatttcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtggtgacagggttgggtggattttcatgcaagctgtatattctccgtggttttttgtttttggattgtatctaatacctcaatttcttttaaccgcagACAGAGAGTGAACTTGTGGAAGCAGTAGACAGAGATTTGAGGAAGATGCTCATTAATCCTAATGCAAAGGATCCACTTGTTTTGGGTGTGAGAGTATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
tgtggtg
- - - - - -ggttggg
- - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctcaa