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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattctgccttctcttgattttatttaatcccatgaatcggattttgtacgagaaatgatgttaaacaatgagatttgcttactctttcccagTGCTTCTTCCCTGAGAACTTGATCGACAACATTAAGACTCCACTCTTTCTTCTCAATGCAGCCTATGATGCATGGCAG

Basic information

species Vitis vinifera
transcript Vv07s0005g02440.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G38430.2 (Glycine max), 3'ss of exon 8
gtaacattctgccttctcttgattttatttaatcccatgaatcggattttgtacgagaaatgatgttaaacaatgagatttgcttactctttcccagTGCTTCTTCCCTGAGAACTTGATCGACAACATTAAGACTCCACTCTTTCTTCTCAATGCAGCCTATGATGCATGGCAG
     | | |   |  ||| ||||| |||  ||   || |   | |  |  ||         |  |||||||   | |||| |||     |   ||||| || || ||| |||| |||||| || |  || |||||||||| ||||| ||||||||||| |||||||||||||||
---gtaatttttttattctggatttcattctattg-ataacatgaaaatgctaaacttgcaaactttaaacatgcaaattttctt-----tgggcagTGTTTTTTTCCTCAGAATTTGATCAACTATGTTGAGACTCCACTGTTTCTGCTCAATGCAGCTTATGATGCATGGCAG

upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G41030.2 (Glycine max), 3'ss of exon 8
gtaacattctgccttctcttgattttatttaatcccatgaatcggattttgtacgagaaatgatgttaaacaatgag-atttgcttactctttcccagTGCTTCTTCCCTGAGAACTTGATCGACAACATTAAGACTCCACTCTTTCTTCTCAATGCAGCCTATGATGCATGGCAG
||||   | |   |     |     ||| | || | ||  ||   ||    | | | |  |      ||||  | |  || |  ||    ||   |||||||| || ||| |||| |||||| || |  || | |||||| | ||||| ||||||||||| |||||||||||||||
gtaattcttttattctgtatacgagtatatcattctattgataacatgaaatgctaaactt----ccaaactttaaacatgtaattttctttgtgcagTGCTTTTTTCCTCAGAATTTGATCAACCATGTTGAAACTCCATTGTTTCTACTCAATGCAGCTTATGATGCATGGCAG

upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G46930.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaacattctgccttctcttgattttattta-atcccatgaatcggattttgtacgagaaa--tgatgttaaacaatgagatttgcttactctttcccagTGCTTCTTCCCTGAGAACTTGATCGACAACATTAAGACTCCACTCTTTCTTCTCAATGCAGCCTATGATGCATGGCAG
||||  ||||  |||   |    || |     |     |  ||  ||       |||| |   | |   |||   || |  ||   || |     | ||||||||||| ||  |||||||| |      ||||||||||||| | ||||||||||||||||| ||||| || ||||||
gtaaatttctcactttgttgatattcacaggcaaattttccattagacaagactcgagcatcttcaaactaatttattatgttctgtttcataccctcagTGCTTCTTTCCCCAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTTCTTCTCAATGCAGCATATGACGCTTGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggattttgtacgagaaatgatgttaaacaatgagatttgcttactctttcccagTGCTTCTTCCCTGAGAACTTGATCGACAACATTAAGACTCCACTCTTTCTTCTCAATGCAGCCTATGATGCATGGCAG
                                      tgcttac  putative branch site (score: 2)
                                    tttgcttactctttcc  CT-rich tract
                       ttaaacaat  TA-rich tract