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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG

Basic information

species Vitis vinifera
transcript Vv07s0005g02100.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405137|gb|CF210764.1|CF210764
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|26262991|gb|CA814054.1|CA814054
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|161712353|gb|FC061927.1|FC061927
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|110360806|gb|EC924193.1|EC924193
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|30133168|gb|CB918507.1|CB918507
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATT
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATT
EST: gi|110710881|gb|EE087442.1|EE087442
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTGCTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|33405222|gb|CF210849.1|CF210849
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|110383074|gb|EC947423.1|EC947423
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|110378688|gb|EC943832.1|EC943832
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|110700287|gb|EE078155.1|EE078155
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
EST: gi|30252766|gb|CB970317.1|CB970317
EST:     TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAA                         CCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
genomic: TTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaaca ... ttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG
                                     cttatctttt  CT-rich tract
            tttttaatatgtatgc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcagCCTCTCTTTCCCGGGGAGAGTGGAGTGGATCAGCTTGTGGAAATCATTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT