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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgctgttttggcactttttgtttataatacactgttgctttactcatcaaaaaaaaaaaaaaagacctgattagtggccatcattttatcccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTACCACACCGGTCAGAGCCTTGAGAAGATCAACCAAGACACTGATCGTGATT

Basic information

species Vitis vinifera
transcript Vv07s0005g01530.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01530.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g19510.1 (Oryza sativa), 3'ss of exon 8
gcgctgttttggcactttttgtttataa-tacactgttgctttactcatcaaaaaaaaaaaaaaagacctgattagtggccatcatt--ttatcccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTACCACACCGGTCAGAGCCTTGAGAAGATCAACCAAGACACTGATCGTGATT
 |  |  |||  |||       |   || | | |||    | || |  |      |  |  | ||||  |   |       ||  |   ||||  ||| | |||| ||||| |||||||||||||||||||| |||||||| || ||  | |||||||| || |||  ||| || |||||||||  ||| ||||| |||||||
-catttatttc-cacaagcgaatagcaactccgctggctttctattgttacttgtatcaccagaagatttttctgtcactgattttccattatttctttt-agGCTAATGAGATGCTGCATCACAAGGCTAACCTGAATGGATACCTAGCATACCACACTGGGCAGCCCCTAGATAAGATCAACGTAGATACTGACCGTGATT

upper sequence: Vv07s0005g01530.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G01510.2 (Glycine max), 3'ss of exon 8
--gcgctgttttggcactttttgtttataatacactgttgctttactcatcaaaaaaaaaaaaaaagacctgattagtggccatcattttatccc----ttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTACCACACCGGTCAGAGCCTTGAGAAGATCAACCAAGACACTGATCGTGATT
  |   || |||  |||||||| | || ||   |   |      | |||| |       | || |   | || | |       | |||  |   |    ||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||| || ||||| || ||  | || ||||||||||| || || || ||||| |
aaggattggtttatcacttttt-tgtacaa-gtatcataa----attcataattctgttataatagtccttgttcaagaaaactgattgcacttcaaaattctcagGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTATCATACCGGCCAAAGTTTAGATAAGATCAACCAGGATACAGACCGTGACT

upper sequence: Vv07s0005g01530.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G01550.2 (Glycine max), 3'ss of exon 8
--gcgctgttttggcactttttgtttataatacactgttgctttactcatcaaaaaaaaaaaaaaagacctgattag--tggccatcattttatcccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTACCACACCGGTCAGAGCCTTGAGAAGATCAACCAAGACACTGATCGTGATT
      |||| |  |||| ||| | || ||   |   ||  || |    ||    | || |          ||  |   ||   || |||    |  ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||| |||| ||||| || || ||  | || ||||||||||| || || || ||||| |
tttacttgttatatcactgttt-tgtacaa-gtatcattaattcataattctgttataatagttcttcttcgagaaaactgattatgattca--caattctcagGCTAATGAAATGCTGCATCATAAGGCAAATCTGAATGGATATCTCGCCTATCACACTGGCCAAAGTTTAGACAAGATCAACCAGGATACAGACCGTGACT

upper sequence: Vv07s0005g01530.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G37880.1 (Glycine max), 3'ss of exon 8
gcgctgttttggcactttttgtttataatacactgttgctttactcatcaaaaaaaaaaaaaaagacctgattagtggccatcattttatcccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTACCACACCGGTCAGAGCCTTGAGAAGATCAACCAAGACACTGATCGTGATT----------------------------
                     |||   |     | |||||||     ||||  ||     |  |||  | | || |   ||   |  |     ||||||||||||||||||||||||||||||||| || |||    ||||||| ||||| ||||| ||||| ||  | || ||||||||||| || || ||  ||||||                            
------------------ggatttgcta-gttttattgcttttaaagtcaagtaattcttactagatataactaattatca--gtcatga---ttctcaggcaaatgaaatgctgcatcacaagGCAAACCTG----GGTATCTTTCCTATCACACTGGTCAAAGTTTAGAAAAGATCAACCAGGATACAGACTGTGATTTTTTCATGAAAGCGAAAGAAGCCAAAGA

upper sequence: Vv07s0005g01530.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G40480.1 (Glycine max), 3'ss of exon 9
----gcgctgttttggcactttttgtttataata-cactgttgctttactcatcaaaaaaaaaaaaaaagacctgattagtggccatcattttatcccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTACCACACCGGTCAGAGCCTTGAGAAGATCAACCAAGACACTGATCGTGATT
       |       | || |  ||  | | |||    | |||| ||     ||||  ||     |  |||  | | |  |   || |   | ||||    ||||||||||||||||||||||||      || |||   ||| |   | |   |||       |      |||||                             
gagtttacccaaggaggacctgatggatttgatagttttattgccttttaagtcaagtaattcttattagatataactgattatcagc-catgatcc----tcagGCAAATGAAATGCTGCATCA------TATTCTT--TGGCTTCTTATTAGACCGTGATTTTT----TCTTGA-----------------------------

upper sequence: Vv07s0005g01530.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G02560.1 (Arabidopsis thaliana), 3'ss of exon 8
------------------------gcgctgttttggcactttttgtttataatacact----gttgctttactcatcaaaaaaaaaaaaaa-----agacctgattagtggccatcattttatcccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTACCACACCGGTCAGAGCCTTGAGAAGATCAACCAAGACACTGATCGTGATT
                         || | |||   | |  |    || | |    ||    |   ||  | | ||   || |  | |  |     | |||| |  |       ||||    ||      ||||||||||||||||||||||||||||| || || || || || ||| | |||||||| ||||| ||||| |||||||| ||||| ||||| || |||||||
gtcattcatcctcgcctttatatttcggtttttaatcccagtcatcttcttaagttcttggagcgactagattgatttgaatatcagatgattttgaaacctaaccacacaagttcatg--gtctgaaaccagGCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATACCACACTGGTCAAAGCCTGGAGAAGATAAACCAGGACACAGACCGTGATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30132490|gb|CB917829.1|CB917829
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110707589|gb|EE084158.1|EE084158
EST:     ATCANCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAAATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTA
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTA
EST: gi|110384364|gb|EC948794.1|EC948794
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351024186|gb|FQ423609.1|FQ423609
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTTCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351048211|gb|FQ442181.1|FQ442181
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349815979|gb|FQ403620.1|FQ403620
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|352798651|gb|FQ480676.1|FQ480676
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGG
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGG
EST: gi|349824782|gb|FQ414640.1|FQ414640
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351021593|gb|FQ429697.1|FQ429697
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110362036|gb|EC925543.1|EC925543
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351054329|gb|FQ450412.1|FQ450412
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110378676|gb|EC943818.1|EC943818
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110691867|gb|EE070457.1|EE070457
EST:     ATCAGCCTCTCGGTGGAGCTCAAAGTGGGCAAACTGACATAGATATTCCG                         GCAAATGAAATGGCT-CATCACAAGGCTAATCGGAATGGG
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATG-CTGCATCACAAGGCTAATCTGAATGGG
EST: gi|71875637|gb|DT024692.1|DT024692
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351024764|gb|FQ430589.1|FQ430589
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCGTCACAGGGCTAATCTGAATGGGTATCTCTTCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349822594|gb|FQ412858.1|FQ412858
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAN                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|30322095|gb|CD005357.1|CD005357
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351031646|gb|FQ459903.1|FQ459903
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|352794509|gb|FQ481742.1|FQ481742
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351047968|gb|FQ441140.1|FQ441140
EST:     ATCAGCCTCTCAGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCACCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|34544227|gb|CF512459.1|CF512459
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTACATCACAAGGCTAATCTGAATGGGTATCTCTCCTAN
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|30321427|gb|CD004689.1|CD004689
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351047409|gb|FQ451921.1|FQ451921
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|352798669|gb|FQ480694.1|FQ480694
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCCAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCAC
EST: gi|351030360|gb|FQ432298.1|FQ432298
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110379552|gb|EC944757.1|EC944757
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349820976|gb|FQ408684.1|FQ408684
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|32249589|gb|CD715408.1|CD715408
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCA
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCA
EST: gi|349817517|gb|FQ407307.1|FQ407307
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110697956|gb|EE075414.1|EE075414
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110712884|gb|EE088319.1|EE088319
EST:     ATCANCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAAGCTAATCTGAATGGGTATCTCTCCCTA
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCC-TA
EST: gi|351049128|gb|FQ449850.1|FQ449850
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCCCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351027334|gb|FQ444583.1|FQ444583
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349826886|gb|FQ418977.1|FQ418977
EST:     TCATGC-TCTCGGTGGAGCTCAAGGTGGGCAAACTGACATACATATTCAT                         GCAAATGAAATGCTGCATCACAAGGCTAATCTG
genomic: TCA-GCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTG
EST: gi|110362844|gb|EC926401.1|EC926401
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351029664|gb|FQ427504.1|FQ427504
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110709053|gb|EE084177.1|EE084177
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAAATATTCAG                         GCAAATGAAATGCTGCATCACAAAGCTAATCTGAATGGG
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGG
EST: gi|351016793|gb|FQ424220.1|FQ424220
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|29781945|gb|CB346812.2|CB346812
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351037597|gb|FQ462580.1|FQ462580
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAA
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349826256|gb|FQ416061.1|FQ416061
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351012618|gb|FQ430181.1|FQ430181
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349825647|gb|FQ421746.1|FQ421746
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349825899|gb|FQ423194.1|FQ423194
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351023787|gb|FQ448338.1|FQ448338
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349811516|gb|FQ409512.1|FQ409512
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATC
EST: gi|349826725|gb|FQ418816.1|FQ418816
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCCTA
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCC-TA
EST: gi|110371862|gb|EC935988.1|EC935988
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110373638|gb|EC937892.1|EC937892
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351040704|gb|FQ438248.1|FQ438248
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110423692|gb|EC990043.1|EC990043
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351051863|gb|FQ455277.1|FQ455277
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|30297979|gb|CB974773.1|CB974773
EST:     GCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: GCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349812565|gb|FQ407184.1|FQ407184
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCCAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTC
EST: gi|349817148|gb|FQ405153.1|FQ405153
EST:     ATCANCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAAT
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAAT
EST: gi|110725852|gb|EE102787.1|EE102787
EST:     ATCANCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAAGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|27586643|gb|CB009338.1|CB009338
EST:     ATCAGCCTCTCGGTGGAGCTCA-GGTGGGCAAACTGACATAGATATTCAG                         GCAAATGANATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTA
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTA
EST: gi|351025638|gb|FQ426652.1|FQ426652
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|32270269|gb|CD719428.1|CD719428
EST:     TCAGCCTCTCGGTGGAGCTCAAGGGTGGGCAA-CTGACATAGATATTCAG                         GCAAAATGAA-TGCTGCATC
genomic: TCAGCCTCTCGGTGGAGCTCAAGG-TGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAA-TGAAATGCTGCATC
EST: gi|110719511|gb|EE094705.1|EE094705
EST:     ATCANCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAA                         GCAAATGAAATGCTGCATCACAAAGGCTA-TCTGAATGGGTATCTCTCCT
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAA-GGCTAATCTGAATGGGTATCTCTCCT
EST: gi|110379101|gb|EC944275.1|EC944275
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351032416|gb|FQ461669.1|FQ461669
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110379281|gb|EC944466.1|EC944466
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|26259816|gb|CA810879.1|CA810879
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110702673|gb|EE078851.1|EE078851
EST:     ATCAGCCTCTCGGTGGAGCTCAAAGTGGGCAA-CTGACATAGATATTCAA                         GCAAATGAAATGCTGCATCACAAAGCTAATCTGAATGGGTATCTCTCCCTA
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCC-TA
EST: gi|349818345|gb|FQ409120.1|FQ409120
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAA
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAA
EST: gi|349830682|gb|FQ416980.1|FQ416980
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349812329|gb|FQ406350.1|FQ406350
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAACGCTA
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTA
EST: gi|349807180|gb|FQ401172.1|FQ401172
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|34544144|gb|CF512376.1|CF512376
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTACATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110385597|gb|EC950139.1|EC950139
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351048277|gb|FQ442247.1|FQ442247
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349829184|gb|FQ419680.1|FQ419680
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCT
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCT
EST: gi|83274530|gb|DV938627.1|DV938627
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110720556|gb|EE096582.1|EE096582
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|352798620|gb|FQ480645.1|FQ480645
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCCAACTGACATAGATATTCAG                         GCAAATGAAATGCTGC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGC
EST: gi|351033794|gb|FQ447832.1|FQ447832
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|351023555|gb|FQ432938.1|FQ432938
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|110361254|gb|EC924714.1|EC924714
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|349828833|gb|FQ419166.1|FQ419166
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
EST: gi|27580053|gb|CB002748.1|CB002748
EST:     ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAG                         GCAAATGAAATGCTGCACCACAAGGCTAATCTGAATGGGTATCTCTCCTAC
genomic: ATCAGCCTCTCGGTGGAGCTCAAGGTGGGCAAACTGACATAGATATTCAGgtgtgttgtt ... cccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcaaaaaaaaaaaaaaagacctgattagtggccatcattttatcccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTACCACACCGGTCAGAGCCTTGAGAAGATCAACCAAGACACTGATCGTGATT
                    acctgat  putative branch site (score: 4)
                                    tcattttatcccttct  putative PPT
     aaaaaaaaaaaaaaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcgctgttttggcactttttgtttataatacactgttgctttactcatcaaaaaaaaaaaaaaagacctgattagtggccatcattttatcccttctcagGCAAATGAAATGCTGCATCACAAGGCTAATCTGAATGGGTATCTCTCCTACCACACCGGTCAGAGCCTTGAGAAGATCAACCAAGACACTGATCGTGATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - aatacac
- - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - actcatc
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatt