Sequence
atgc intronic sequence ATGC exonic sequencegtaattctatttttcatttggtttttagtttgctaataactgtctacttctcatcatcattaccattattattctgtttccagGTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 8
------------gtaattctatttttcatttggtttttagtttgctaa---taactgtctacttctcatcatcattaccattattattctgttt--ccagGTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAG
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tgttttatcttgttagatgttatatcaaatggatcaagtgtatgataaccctagctcctaaatcttgttcctaacatttaatattactatacttgtacagACTAGCATTGCGATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAG
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G37450.1 (Glycine max), 3'ss of exon 10
---------------gtaattctatttttcatttggtttttagtttgctaa---taactgtctacttctcatcatcattaccattattattctgtttccagGTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAG
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tgttgttttatcttgttagatgtgatatcaaatggattgagtgtatgataagcctagct-cctaaatcgtgttcctaacattaatattaatatttgtacagACTAGCATTGCGATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATAAAG
upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G02260.2 (Arabidopsis thaliana), 3'ss of exon 8
gtaattctatttttcatttggtttttagtttgctaataactg----tctacttctcatc----atcattacc--attattattctgtttccagGTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAG
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gtgattctttcaagtagttgagatttg--ttgcccatagctccagctctatgtttcatttgggataactaatgaatttgtgagtttcgtccagTCCAGCATTGCAGGGGAGACTTTGCAGGTCTTTGCTCCTTTAGCAAAATTATTGGGAATGTATTCAATAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgctaataactgtctacttctcatcatcattaccattattattctgtttccagGTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAG
taataac putative branch site (score: 1)
ttctgtttcc putative PPT
attaccattattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattctatttttcatttggtttttagtttgctaataactgtctacttctcatcatcattaccattattattctgtttccagGTCAGCATCGCAACAGAGACGTTGCAGGTCTTTGCTCCTCTAGCAAAATTGCTAGGGATGTATCAAATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC