1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attttctaatgaactataaccgttattggttgtagcttgcaatgaaactagctagctatacatgaatccacacaacttacgcatctgcttttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGTTTGCCACTTTTAAAGGCATTTTGCTCCCAATTTATGTCTGAAGTGAGGG
species | Vitis vinifera |
transcript | Vv07s0005g00230.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|349819985|gb|FQ404707.1|FQ404707
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|349819983|gb|FQ404705.1|FQ404705
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|110372194|gb|EC936345.1|EC936345
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGTEST: gi|110383606|gb|EC947989.1|EC947989
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGTEST: gi|349827595|gb|FQ422463.1|FQ422463
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|351029470|gb|FQ436864.1|FQ436864
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|110692708|gb|EE068197.1|EE068197
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGGCGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|351012236|gb|FQ426958.1|FQ426958
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGTEST: gi|351044635|gb|FQ443166.1|FQ443166
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGCAAAGACAGGTGGAAGTAGAG GTGGGAGGACGAGGACTATGTTGATACAAGTTTCTGATEST: gi|351025082|gb|FQ433499.1|FQ433499
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGG-AGGACGAGGACGAGGTTGATACAAGTTTCTGAT
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|349828184|gb|FQ415512.1|FQ415512
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|351056955|gb|FQ443582.1|FQ443582
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGTEST: gi|110374587|gb|EC939452.1|EC939452
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGT
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGGCGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|351038850|gb|FQ448493.1|FQ448493
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|110372487|gb|EC936658.1|EC936658
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGGCGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|352790730|gb|FQ478278.1|FQ478278
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGCEST: gi|349828185|gb|FQ415513.1|FQ415513
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
EST: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAG GTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGTGAGGC
genomic: TGGAGGCCGAGGTAGAGGTGGGCCTGGTGGAAAGACAGGTGGAAGTAGAGgtaaagcttt ... ttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAG-G---C
aactagctagctatacatgaatccacacaacttacgcatctgcttttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGTTTGCCACTTTTAAAGGCATTTTGCTCCCAATTTATGTCTGAAGTGAGGG
aacttac putative branch site (score: 2)
tctgctttt putative PPT
tatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttctaatgaactataaccgttattggttgtagcttgcaatgaaactagctagctatacatgaatccacacaacttacgcatctgcttttgctgacagGTGGAGGACGAGGACGAGGTTGATACAAGTTTCTGATAAACTGAGGCAAGTTTGCCACTTTTAAAGGCATTTTGCTCCCAATTTATGTCTGAAGTGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - -aatgaac
- - - - - - - - - - - - - tggttgt
- - - - - - - - - - - - - - - - - gcttgca
- - - - - - - - - - - - - - - - - - - - - -gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaca