1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgcttcagaagaatttacccctatgattgatgataatttggagcatcttgatgttctctttttctttttccttttaggatatgatacttgtttatattctcttattatattgcaatattagttatttcaatttttgttgctgtagCAAGCCTGTATATGTCATTGGAGCTGAGCGTTGTACATGGAAGTTCTCAGATTTCCATAATACTCTGAGGGAACGAGGAGTGGTTCGACCATTTACGGGT
species | Vitis vinifera |
transcript | Vv06s0080g00830.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTATGATAAGTGAGGCTTGCAGCACAGG CAAGCCTGTATATGTCATTGGAGCTGAGCGTTGTACATGGAAGTTCTCAGAEST: gi|33402023|gb|CF207650.1|CF207650
genomic: AGTATGATAAGTGAGGCTTGCAGCACAGGgtatgcttca ... gttgctgtagCAAGCCTGTATATGTCATTGGAGCTGAGCGTTGTACATGGAAGTTCTCAGA
EST: GTTGGCACAGCAGATTCAGTGAGTATGATAAGTGAGGCTTGCAGCACAGG CAAGCCTGGATATGTCATTGGAGCTGAGCG
genomic: GTTGTCACAGCAGATTCAGTGAGTATGATAAGTGAGGCTTGCAGCACAGGgtatgcttca ... gttgctgtagCAAGCCTGTATATGTCATTGGAGCTGAGCG
tttatattctcttattatattgcaatattagttatttcaatttttgttgctgtagCAAGCCTGTATATGTCATTGGAGCTGAGCGTTGTACATGGAAGTTCTCAGATTTCCATAATACTCTGAGGGAACGAGGAGTGGTTCGACCATTTACGGGT
tttttgtt CT-rich tract
ttattatattgcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttcagaagaatttacccctatgattgatgataatttggagcatcttgatgttctctttttctttttccttttaggatatgatacttgtttatattctcttattatattgcaatattagttatttcaatttttgttgctgtagCAAGCCTGTATATGTCATTGGAGCTGAGCGTTGTACATGGAAGTTCTCAGATTTCCATAATACTCTGAGGGAACGAGGAGTGGTTCGACCATTTACGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG