1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactttccattcattgttttgatcatctgcagagttcaatttactctcttatcccttagttacatgcatggaattctaccctaaaatcaactttatttcagttttctattggactgaaatctgtaactctgtttgcttgcaatgatgaacatgcttggatattgatactgtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTGTTGTAGCACAATTTGATCTGGATAAAATCAAATCCAAGAGATATAGTTG
species | Vitis vinifera |
transcript | Vv06s0080g00560.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAG GACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTGEST: gi|30321318|gb|CD004580.1|CD004580
genomic: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAGgtactttcca ... gtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTG
EST: AGAGCATGGAAATACTGAAATCACATTTTATGGAAACTCTTTTATAGCAG GACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTGEST: gi|22014795|gb|BQ799829.1|BQ799829
genomic: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAGgtactttcca ... gtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTG
EST: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAG GACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTGEST: gi|30134451|gb|CB919789.1|CB919789
genomic: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAGgtactttcca ... gtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTG
EST: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAG GACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTGEST: gi|26257496|gb|CA808559.1|CA808559
genomic: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAGgtactttcca ... gtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTG
EST: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAG GACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAAAGGATGGCTGTTEST: gi|110385570|gb|EC950109.1|EC950109
genomic: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAGgtactttcca ... gtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAG-CTGTT
EST: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAG GACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTGEST: gi|34543783|gb|CF512015.1|CF512015
genomic: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAGgtactttcca ... gtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTG
EST: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAG GACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTG
genomic: AGAGCATGGAAATACTGAAATCACATTCTATGGAAACTCTTTTATAGCAGgtactttcca ... gtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTG
aactctgtttgcttgcaatgatgaacatgcttggatattgatactgtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTGTTGTAGCACAATTTGATCTGGATAAAATCAAATCCAAGAGATATAGTTG
tattgat putative branch site (score: 3)
atattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttccattcattgttttgatcatctgcagagttcaatttactctcttatcccttagttacatgcatggaattctaccctaaaatcaactttatttcagttttctattggactgaaatctgtaactctgtttgcttgcaatgatgaacatgcttggatattgatactgtgattatagGACCCACTGGAGAAATTGTCGCAGCTGCTGATGATAAAGAGGAAGCTGTTGTTGTAGCACAATTTGATCTGGATAAAATCAAATCCAAGAGATATAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA