Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatgttttgtgtcccttagcagtgtagtcttttagcttcagcagagggcgtattgccctcctctcaaaagtgttgcactaatatggggctttttttattgaatagGATGATGGTGTTGATGTGAGGTATGGAGGGCTTGGCCTTCGGCAGCAAGGGGTAGCAGTCGCACACTGTAAACTTGAGCCATTGGTCGCAAATTTCATGA

Basic information

species Vitis vinifera
transcript Vv06s0080g00260.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00260.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G19070.1 (Glycine max), 3'ss of exon 9
gtataatgttttgtgtcccttagcagtgtagtcttttagcttcagcagagggcgtattgccctcctctcaaaagtgttgcactaatatggggctttttttattgaatagGATGATGGTGTTGATGTGAGGTATGGAGGGCTTGGCCTTCGGCAGCAAGGGGTAGCAGTCGCACACTGTAAACTTGAGCCATTGGTCGCAAATTTCATGA
                      | |   ||   || ||        | |     | |    | |||||   |  |    |||    ||        ||  |||| |||||||||||| ||||| || ||  |||| |  || || ||||||||||  ||| ||||||   ||||||| ||||||||||| ||||| |||||||| ||||
----------------------gtatattacaattatattccttataaattatttgtctgtcacctctttcagctaacacacagtaata-------ttaaattgcatagGATGATGGAGTTGAAGTTAGACATGGCGCACTAGGTCTTCGGCAGCTGGGGATAGCAGCGACACACTGCAAACTTGAGCCTTTGGTTGCAAATTTTATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgccctcctctcaaaagtgttgcactaatatggggctttttttattgaatagGATGATGGTGTTGATGTGAGGTATGGAGGGCTTGGCCTTCGGCAGCAAGGGGTAGCAGTCGCACACTGTAAACTTGAGCCATTGGTCGCAAATTTCATGA
                         cactaat  putative branch site (score: 2)
                                      ctttttttatt  putative PPT
                                       tttttttattgaata  TA-rich tract