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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaataactttagttatatcctttttttaaagttactgattagtaactggctgtgggtttctcaccagATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAG

Basic information

species Vitis vinifera
transcript Vv06s0061g00940.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G040247_T01 (Zea mays), 3'ss of exon 8
--------------------------------------------------------------gtaccaaataactttagttatatcctttttttaaagttactgattagtaactggctgtgggtttct---caccagATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAG
                                                              |         | |||  |      |    | |    | | |||||  |   |   |      || |   |  ||||||||| |||||||||||||||||||| || || |||||||| || || || || || ||||| |||||     || |||||||||| ||||||
gttagaaaatatgtggatacacagataccaccttttgttgaatgatctagcataacaccgatgagttgtgagattttgatggatctcaccctatgtgttaattgattcattttttaatcaaaacttttatgcgacagATGGGTCTTCCACTTTGCTCATCTCCGCCAACTTCCTGTTTTGGTCCCTTATATTCCTACAGAAAATCCTCAGCTGAGTGATACTGCATATGAG

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 8
gtaccaaataactttagttatatcctttttttaaagttactgattagtaactgg-----ctgtgggtt--tctcaccagATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAG
|||    ||  | ||| ||||     | ||    |||| |||||| |||| |||     | ||||  |  | ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| || || ||| | |||||||||||||| |||
gtatggcatgccattatttattagtctgttaatgagtt-ctgatttgtaaatgggtgttcagtggactgctttcaacagATGGGTTTTCCACTTTGCACATCTTCGTCAGCTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAG

upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 8
gtaccaaataactttagttatatcctttttttaaagttactgattagtaactggctgt-----gggtt--tctcaccagATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAG
||||   ||  | ||| ||||     | || || |||| |||||| |||| ||| |||     ||  |  | ||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || || || || ||| | |||||||||||||| |||
gtacggcatgccattatttattagtctgttatagagtt-ctgatttgtaattgggtgttcaatggactgctttcaacagATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACATGCCTACTGAAAACCCCAGACTACGTGATACTGCTTACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatcctttttttaaagttactgattagtaactggctgtgggtttctcaccagATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAG
                           tagtaac  putative branch site (score: 1)
                                            tttctcacc  putative PPT
        tttttttaaagttact  TA-rich tract