1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggtgtgtgttttattattattattattaaaaataatctcttttggggcagggaggaggcaaatatattattataactaaaatcttggaattttgatgcagGAAAAGTGGAGTGGAGTGGAGTGGAGTGGAGTTGTGGGTTGCCAGGGTTCCATCTGCAGTGAGAAGACCTTAATAAGATTTTCTATTGAGAACAATATTT
species | Vitis vinifera |
transcript | Vv06s0061g00460.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAACTGTGAGTACCACTGCTGCTTGAGAAAATGAGACAAGAATTTCAG GAAAAGTGGAGTGGAGTGGAGTGGAGT----T-GTGGGTTGCCAGGGTTCC
genomic: TGGAACTGTGAGTACCACTGCTGCTTGAGAAAATGAGACAAGAATTTCAGgtaaactttt ... tttgatgcagGAAAAGTGGAGTGGAGTGGAGTGGAGTGGAGTTGTGGGTTGCCAGGGTTCC
ggcagggaggaggcaaatatattattataactaaaatcttggaattttgatgcagGAAAAGTGGAGTGGAGTGGAGTGGAGTGGAGTTGTGGGTTGCCAGGGTTCCATCTGCAGTGAGAAGACCTTAATAAGATTTTCTATTGAGAACAATATTT
aaatatattattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgtgtgttttattattattattattaaaaataatctcttttggggcagggaggaggcaaatatattattataactaaaatcttggaattttgatgcagGAAAAGTGGAGTGGAGTGGAGTGGAGTGGAGTTGTGGGTTGCCAGGGTTCCATCTGCAGTGAGAAGACCTTAATAAGATTTTCTATTGAGAACAATATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-gtgtgtg
- - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - gcaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa