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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagataagacacagtatctttcatatcatcaaatgacctgaaactgatacattactggggtatccgactgttttaactgtttagtgggtttcacctttctcagATTCCTGATGTCCCTTTAAAGGTGAGAAAGCTCGTCGTAAAGGTGTGTGATGTAGTGACCCGCAGGGCTGCCCGATTGGCAGCCGCAGGCATTGTTGGGA

Basic information

species Vitis vinifera
transcript Vv06s0061g00040.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G02450.1 (Glycine max), 3'ss of exon 8
--gtagagataagacacagtatctttcatatcatcaaatgacctgaaactgatacattactggggtatccgactgttttaactgtttagtgggtttcacctttctcagATTCCTGATGTCCCTTTAAAGGTGAGAAAGCTCGTCGTAAAGGTGTGTGATGTAGTGACCCGCAGGGCTGCCCGATTGGCAGCCGCAGGCATTGTTGGGA
    | |  |  |||||  |||||||  | || | |||       ||   | |  | | ||        | |   ||     |||||    || ||   |  ||||||||||||||||| ||||||||| | |||||  | || || |||||||||||||| ||||| ||||| || || ||||||||||| || ||||||||||| |
gtaaacaagtctgacaccatatcttt--tgtccttaaa-------aagtcggtcaagt-ctaa------caatcattccttatgttt----ggcttgtgcggtctcagATTCCTGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGATGTGGTGACTCGCAGAGCGGCACGATTGGCAGCTGCCGGCATTGTTGGTA

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G10130.1 (Glycine max), 3'ss of exon 8
--gtagagataagacacagtatctttcatatcatcaaatgacctgaaactgatacattactggggtatccgactgttttaactgtttagtgggtttcacctttctcagATTCCTGATGTCCCTTTAAAGGTGAGAAAGCTCGTCGTAAAGGTGTGTGATGTAGTGACCCGCAGGGCTGCCCGATTGGCAGCCGCAGGCATTGTTGGGA
    | |  |  |||||  |||||||  |      || |      |  || | | || | |                |||  ||||| |     ||   || ||||||||||| ||||| ||||| ||| | |||||  | || || |||||||||||||| ||||| ||||| ||||| ||||||||||| || || |||||||| |
gtaaacaagtctgacaccatatcttttgtccttaaaagtcgatcaagtctaaca-atcatt--------------cctta--tgtttggc---cttgtgctgtctcagATTCCCGATGTTCCTTTGAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGATGTGGTGACTCGCAGAGCTGCGCGATTGGCAGCTGCTGGTATTGTTGGTA

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G43650.1 (Glycine max), 3'ss of exon 8
gtagagataa-gacacagtatctttcatatcatcaaatgacctgaaactgatacattactggggtatccgactgttttaactgtttagtgggtttcacctttctcagATTCCTGATGTCCCTTTAAAGGTGAGAAAGCTCGTCGTAAAGGTGTGTGATGTAGTGACCCGCAGGGCTGCCCGATTGGCAGCCGCAGGCATTGTTGGGA
||| | | || || |||  ||   |  | ||   |||    |     |   ||| |       || |   | |  |||| ||  |  ||| || |        ||||||||||||||| || || ||||  |||||  | || || |||||||||||||| ||||| || || ||||| ||||||||||| || || |||||||| |
gtaaacaaaatgagacaccataagttttgtccctaaa----ccagtgcccttacctgctaatagtctaataataatttatcttgtacgtgagtgtt-------tcagATTCCTGATGTTCCCTTGAAGGCAAGAAAAATTGTGGTGAAGGTGTGTGATGTGGTGACTCGTAGAGCTGCTCGATTGGCAGCTGCTGGTATTGTTGGTA

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G01820.1 (Glycine max), 3'ss of exon 8
gtagagataagacacagtatctttcatatcatcaaatgacctgaaactgatacattactggggtatccgactgttttaactgtttagtgggt-ttcacctttctcagATTCCTGATGTCCCTTTAAAGGTGAGAAAGCTCGTCGTAAAGGTGTGTGATGTAGTGACCCGCAGGGCTGCCCGATTGGCAGCCGCAGGCATTGTTGGGA
    | | || |      | | |   | |  ||       |  ||||   |    |     | ||   |       |||   ||||    || ||    | ||||||||||||||| | || || ||||  |||||  | || || |||||||||||||| ||||| || || ||||| ||||||||||| || || |||||||| |
--gtaaacaaaatgagacaccataagttttgtc-------cctaaacgagtgtccttgcctgctaatagttcaaaataataatttatcatgtatttgggtgtctcagATTCCTGATATTCCCTTGAAGGCAAGAAAATTTGTGGTGAAGGTGTGTGATGTGGTGACTCGTAGAGCTGCTCGATTGGCAGCTGCTGGTATTGTTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattactggggtatccgactgttttaactgtttagtgggtttcacctttctcagATTCCTGATGTCCCTTTAAAGGTGAGAAAGCTCGTCGTAAAGGTGTGTGATGTAGTGACCCGCAGGGCTGCCCGATTGGCAGCCGCAGGCATTGTTGGGA
                      ttttaac  putative branch site (score: 2)
                                        tttcacctttctc  putative PPT
                    tgttttaa  TA-rich tract