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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgtcaaattacttgtcagtctccctctcaatttattcgacagtggaaaccaaactgaaagtaaccacccatattgttgtagATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTTGAGGCTCTTGGATACACTTCCCAAATGCAGTTCAAGTTCTGAGGTTCCT

Basic information

species Vitis vinifera
transcript Vv06s0009g01710.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g01710.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G05640.1 (Glycine max), 3'ss of exon 8
----gtaaatgtcaaattacttgtc---agtctccctctcaatttattcgacagtggaaaccaaactg--aaagtaaccacccatattgttgt-----agATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTTGAGGCTCTTGGATACACTTCCCAAATGCAGTTCAAGTTCTGAGGTTCCT
         | ||||||||  | ||     | ||  ||| | ||   ||  |      || || ||    ||  |||| ||  |  |  || |     ||||||| ||||| || ||||| |||||||||||||| ||||| | | | ||||| ||||||||||||| | |||||||||||||  |||| | ||  |   
tatctcctttttcaaattatctctcttgtatttctatcttatttctctcctctaaaccaaacacaccattaagataacaacttaactaattattttacagATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTAATCTTGAAGCTCTTGGATACAGTCCCCAAATGCAGTTTCAGTTTTAAGTCTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110388734|gb|EC953513.1|EC953513
EST:     CAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCGATATTCAG                         ATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTT
genomic: CAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAGgtaaatgtca ... attgttgtagATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTT
EST: gi|110401612|gb|EC968227.1|EC968227
EST:     CAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCGATATTCAG                         ATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTT
genomic: CAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAGgtaaatgtca ... attgttgtagATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTT
EST: gi|33406066|gb|CF211693.1|CF211693
EST:     CAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAG                         ATATTGAGGTGTGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTT
genomic: CAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAGgtaaatgtca ... attgttgtagATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTT
EST: gi|33405978|gb|CF211605.1|CF211605
EST:     CAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAG                         ATATTGAGGTGTGGGCCCCCGCCCATGAACAAGGCCATGGCAGGTCACCTT
genomic: CAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAGgtaaatgtca ... attgttgtagATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatttattcgacagtggaaaccaaactgaaagtaaccacccatattgttgtagATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTTGAGGCTCTTGGATACACTTCCCAAATGCAGTTCAAGTTCTGAGGTTCCT
                               aagtaac  putative branch site (score: 2)
                                           atattgtt  TA-rich tract