Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatacttgaacttgtgatcttctatcaggaataaaaaatggcatgctaattcaacaaatcaactcaaaatccccagGTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG

Basic information

species Vitis vinifera
transcript Vv06s0004g07380.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g07380.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G06500.1 (Glycine max), 3'ss of exon 8
gtaagatacttgaacttgtgatcttctatcaggaataaaaaatggcatgctaattcaacaaatcaactcaaaatccccagGTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG
||| | ||||   ||||||     |||| || ||| | |  |  |     |||||  ||   | |      | |   ||||| ||||| || |||| |||||||||||||||||||||||| |||||||| || || || || || || ||| |||| || ||||||
gtatgctactgatacttgtttcaatctaacaagaagacatgaatgggaaataattatacctgtta---tgcatttggcagGTTACTTCACCTGTTCAATGGGAAACAACAGTGAAGACTCTTCTAACCAAGGGTCTGAAGAAAAGCTATGAACTGGGACCCGGAAAG

upper sequence: Vv06s0004g07380.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G29520.1 (Glycine max), 3'ss of exon 5
gtaagatacttgaacttgtgatcttctatcaggaataaaaaatggcatgctaattcaacaaatcaactcaaaatccccagGTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG
||| | ||||   ||||||     |||| || ||| | |  |  |     |||||  ||   | |      | |   ||||| || || || |||| |||||||||||||||| ||||||| |||||||| || || || || || || ||| | || || ||||||
gtatgttactgatacttgtttcaatctaacaagaagacatgaatgggaaataattgcacctgtta---tgcatttggcagGTTACCTCACCTGTTCAATGGGAAACAACAGTGCAGACTCTTCTAACCAAGGGTCTGAAGAAAAGCTATGAACTCGGACCCGGAAAG

upper sequence: Vv06s0004g07380.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G30200.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagatacttgaacttgtgatcttctatcaggaataaaaaat--ggcatgctaattcaacaaatcaactcaaa----atccccagGTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG
|||| | |     |||        | | | |   ||      |  |||      ||  || |||   |  ||||      |  |||||||| || ||||| | |||||| |||||||| ||||||||| || |||||||||| ||||  || ||||||||||| |||||||||
gtaataaatcaatactcagagaactatgtgaattatttctcttttggcgacgctatataaaaaaaagatgcaaatgttgactacagGTGACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG

upper sequence: Vv06s0004g07380.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G30200.2 (Arabidopsis thaliana), 3'ss of exon 8
gtaagatacttgaacttgtgatcttctatcaggaataaaaaat--ggcatgctaattcaacaaatcaactcaaa----atccccagGTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG
|||| | |     |||        | | | |   ||      |  |||      ||  || |||   |  ||||      |  |||||||| || ||||| | |||||| |||||||| ||||||||| || |||||||||| ||||  || ||||||||||| |||      
gtaataaatcaatactcagagaactatgtgaattatttctcttttggcgacgctatataaaaaaaagATGCAAATGTTGACTACAGGTGACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCT------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361598|gb|EC925084.1|EC925084
EST:     CACAGCCACATGCAGATCCCGACACGATTAAGAAGATATTGGCGCGTCAG                         GTGACTTCCCCGGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAA
genomic: CACAGCCACATGCAGATCCCGACACGATTAAGAAGATATTGGCGCGTCAAgtaagatact ... aaatccccagGTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAA
EST: gi|110687429|gb|EE064834.1|EE064834
EST:     CACAGCCACATGCAGATCCCGACACGATTAAGAAGATATTGGCGCGTCAG                         GTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAA
genomic: CACAGCCACATGCAGATCCCGACACGATTAAGAAGATATTGGCGCGTCAAgtaagatact ... aaatccccagGTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatcaggaataaaaaatggcatgctaattcaacaaatcaactcaaaatccccagGTGACTTCCCCAGTTCTATGGGAAACAACAGTGAAGACTCTCCTAACCAAAGGACTAAAAAAGAGTTACGAATTGGGGCCTGGAAAG
                      tgctaat  putative branch site (score: 2)
                                                tcccc  putative PPT
        aataaaaaat  TA-rich tract