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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactggctacccatttcttatttctcctatgtctgcatatgttattttaaattatttgattactgaaccacagactttttgcagTTCATCACTATGATACGCTCCAGTCGAACTGATCTTGAGAGTAAAATTCCCAATATGTGTATCTTAGATAATAATCCCCAAAAGCCAGTGGTGCGGATGG

Basic information

species Vitis vinifera
transcript Vv06s0004g06020.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864360|gb|DT013415.1|DT013415
EST:     GGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGG                         TTCATCACTATGATACGCTCCAGTCGAACTGATCTTGAGAGTAAAATTCCC
genomic: GGAAGCTTCTTCCACGCCATATGGAAATCATAGAAGAAATTGATAAGCGGgtaaactggc ... ctttttgcagTTCATCACTATGATACGCTCCAGTCGAACTGATCTTGAGAGTAAAATTCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctgcatatgttattttaaattatttgattactgaaccacagactttttgcagTTCATCACTATGATACGCTCCAGTCGAACTGATCTTGAGAGTAAAATTCCCAATATGTGTATCTTAGATAATAATCCCCAAAAGCCAGTGGTGCGGATGG
                        atttgat  putative branch site (score: 5)
                                             ctttttgc  putative PPT
       atatgttattttaaat  TA-rich tract