Sequence
atgc intronic sequence ATGC exonic sequencegtgagttacctaattttgttgtactgttattaaattgtcatttcatgttctaatccattatccttctatattttgattgacacagAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G07260.1 (Glycine max), 3'ss of exon 8
gtgagttacctaattttgttgtactgttattaaattgtcatttcatgttctaatccattatccttctatattttgattgacacagAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAG
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gtaagtta-----ttttgttgtacatccat-gttctgttggccagatttttcgtgtctgacatttgc-taacttgatg---acagAATGACGGTGATGTGAAAATAGTTGTTGGGAATAACTTTGATGAAATTGTTTTGGATGAGTCAAAGGATGTTTTGCTTGAG
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G20630.1 (Glycine max), 3'ss of exon 8
gtgagttacctaattttgttgtactgttattaaattgtcatttcatgttctaatccattatccttctatattttgattgacacagAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAG
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gtaagttattt--tgttatcagtccgtgttccattggccaaa--attttcatgtctgacatgttttcttactt-gatg---acagAATGATGGTGATGTGAAAATAGTTGTTGGTAATAACTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTGCTTGAG
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G29550.1 (Glycine max), 3'ss of exon 8
gtgagttacctaattttgttgtactgttattaaattgtcatttcatgttctaatccattatccttcta-tattttgattgacacagAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAG
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gtatgttacttaatttttccaccataattatgttctattaatttagtttttcatgtctaacgtgtttgctaacttggta---acagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAG
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G40130.1 (Glycine max), 3'ss of exon 8
gtgagttacctaattttgttgt-actgttattaaattgtcatttcatgttctaatccattatccttcta-tattttgattgacacagAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAG
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gtatgttatttaattttcccaccgtcaattatgtcctattaatttagtttttcatgcctaacgtgtttgctaacttggta---acagAATGATGGTGATGTGAAAATAGTAGTTGGTAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAG
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G60640.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgagttacctaattttgttgtactgttattaaattgtcatttcatgttctaatccattatcctt-ctatattttgattgacacagAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAG
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---------gtaaagccgttttattattaatttccaaccgtcttgttggctcatgtaacaccgaaacttaattttggtggctacagAACGATGAAGATGTGAAAATAGTGGTTGGAGATAACTTTGATGAAATTGTTCTGGACGATTCTAAAGATGTGCTTCTCGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188365|gb|CF607714.1|CF607714EST: TGGAAGACAAAGTCAAACCCTTCTTTAAATCAGATCCAATTCCTGAGTCT AATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTTGATGAAATTGTT
genomic: TGGAAGACAAAGTCAAACCCTTCTTTAAATCAGATCCAATTCCTGAGTCTgtgagttacc ... attgacacagAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaattgtcatttcatgttctaatccattatccttctatattttgattgacacagAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAG
ttctatattttgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttacctaattttgttgtactgttattaaattgtcatttcatgttctaatccattatccttctatattttgattgacacagAATGATGAGGATGTGAAAATAGTGGTCGGGGATAACTTCGATGAAATTGTTTTGGATGAATCAAAGGATGTTCTTCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG