Sequence
atgc intronic sequence ATGC exonic sequence...atttgaaattgattaatcccatctagcattttggccttttctttttaattgatagtgggtgttaagcattaacaatttaatgttgcaactggtcttgcagATGGGACTTCTGTTTTTACAAGGGAAATGTGGTGGAGCACCTTGATGGTCATACGGATATTGTTCACAAGCAGTTATATAGAGATTGGTTACCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G29750.1 (Glycine max), 3'ss of exon 8
---atttgaaattgattaatcccatctagcattttggccttttctttttaattgatagtgggtgttaagcattaacaatttaatgttgcaactggtcttgcagATGGGACTTCTGTTTTTACAAGGGAAATGTGGTGGAGCACCTTGATGGTCATACGGATATTGTTCACAAGCAGTTATATAGAGATTGGTTACCTTG
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atgatttgata--aaccaactgtggttgtcaagttcaatttgcattgttaatttattatattaatgaggttgttactatt-atcattaaatatcggtttgcagATGGGATTTCTGTTTCTACAAGGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAGCTATTTAGCGATTGGTTGCCTTG
upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G40010.1 (Glycine max), 3'ss of exon 8
------atttgaaattgattaatcccatctagcattttggccttttctttttaattgatagtgggtgttaagcattaacaattta-atgttgcaactggtcttgcagATGGGACTTCTGTTTTTACAAGGGAAATGTGGTGGAGCACCTTGATGGTCATACGGATATTGTTCACAAGCAGTTATATAGAGATTGGTTACCTTG
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taaaccaaccatggttg-tcaagttcagtttgcattattgatttattatgttaat-----gaggttgttaa-tattatcattaaatacattaaatatcggcttgcagATGGGATTTCTGTTTCTACAAAGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAACTATTTAGCGATTGGTTGCCTTG
upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G28320.1 (Arabidopsis thaliana), 3'ss of exon 8
------------atttgaaattgattaatcccatctagcattttggcctt--ttctttttaattgatagtgggtgtta---agcattaacaatttaatgttgcaactggtcttgcagATGGGACTTCTGTTTTTACAAGGGAAATGTGGTGGAGCACCTTGATGGTCATACGGATATTGTTCACAAGCAGTTATATAGAGATTGGTTACCTTG
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gtaagtactactgcctctttccagacaagcaagcctaagatattaacaatcgtagaacataaacaaatgcgggtattgtttacttttcctgaactaaattctcga--aactttgcagATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattgatagtgggtgttaagcattaacaatttaatgttgcaactggtcttgcagATGGGACTTCTGTTTTTACAAGGGAAATGTGGTGGAGCACCTTGATGGTCATACGGATATTGTTCACAAGCAGTTATATAGAGATTGGTTACCTTG
attaacaatttaatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttgaaattgattaatcccatctagcattttggccttttctttttaattgatagtgggtgttaagcattaacaatttaatgttgcaactggtcttgcagATGGGACTTCTGTTTTTACAAGGGAAATGTGGTGGAGCACCTTGATGGTCATACGGATATTGTTCACAAGCAGTTATATAGAGATTGGTTACCTTG
- - -aaattga
- - - - - - - - -cccatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcaac