Sequence
atgc intronic sequence ATGC exonic sequencegtaatggcttacatgaagtttatctgcttcatattttattactgaattccttttgtttccccataatatgttgtccataatttctttcagGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTAAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G455243_T01 (Zea mays), 3'ss of exon 7
--------------------------gtaatggcttacatgaagtttatctgcttcatattttattactgaattccttttgtttccccataatatgttgtccataatttct------ttcagGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTAAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGG
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gtacttttgatcttttgctttgtggaataatga--taaaataaatttgtcctactcaactgtagctgacacataaccctaatgaaagaattgtaattggtgtattacttttaaaatctgcagGTTGTATATGAGCAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTTCACTATTTAACAGAACATTTTTCAGGTGGCACTAAAATTGGAAAGCAAG
upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G168249_T01 (Zea mays), 3'ss of exon 7
------------------gtaatggcttacatgaagtttatctgcttcatattttattactgaattccttttgtttccccataatatgttgtccataatttcttt--------cagGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTAAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGG
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gtacttctgctttgtggcataatga--taaataaatctgtcctactcaactgtagcttgcacatagccctcgggattcaggaactgtaattcatgtattctttttaaaacttgcagGTTGTATATGAACAGTTGAGTGGGCATAGGGTTGGGTGGAAAAAGGCTCTTCACTATTTAACAGAACATTTTTCAGGTGGTACTAAAATTGGAAAGCAAG
upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 9
gtaatggcttacatgaagtttatc-tgcttcatattttattactgaattccttttgtttccccataatatgttgtccataatttctttcagGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTAAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGG
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---gtaaagttcatgaagtatatagtatcttgtgcctagttagtcttgatattccgaggtcattttct-tatagtcttgatattctttcagGTTATTTATGAGGCACTAAATGGCCACAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTAAATGAGAGATTTGTAGAAGGAAAGAAAACCAGAGATGAGG
upper sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G41490.1 (Glycine max), 3'ss of exon 7
------gtaatggcttacatgaagttt---atctgcttcatattttat---tactgaattccttttgtttccccataat----atgttgtccataat-ttctttcagGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTAAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGG
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gtaaagttcatgaagtatatagtatcttgtgcctagttattattacataagcatacaatcatacttattccgaggtcattttcttatagtcttgaatactcttccagGTTATTTATGAGGCACTAAATGGCCACAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTAAATGAGAGATTTGTAGAAGGAAAGAAAACCAGAGATGAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattactgaattccttttgtttccccataatatgttgtccataatttctttcagGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTAAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGG
tttctttc CT-rich tract
ataatttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatggcttacatgaagtttatctgcttcatattttattactgaattccttttgtttccccataatatgttgtccataatttctttcagGTTATATATGAGGCATTAAGTGGTCATAGGGTTGGTTGGAAAAAGGCTCTTCACTTGCTAAATGAGCGATTTGCAGATGAAAGCAAAATTGCCAAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG