Sequence
atgc intronic sequence ATGC exonic sequencegcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 8
gcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG
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-----------------------------gcatgtctcttatc--ttattaaagggcttccattatatcacttca-tacttccgcatatcatt-ttatcttttacttttatgat-ttgttttta--gGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G03060.1 (Glycine max), 3'ss of exon 9
gcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG
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-----------------------------gcatgcctcttatct-tattaccgggtttccattatattacttcatacttccacctatcattttatc---ttttacttttatgat-ttgttttta--gGTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G45990.1 (Glycine max), 3'ss of exon 8
gcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG
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-------------------------gcatgttcattacctaagagggttggcattttattgcttcatccttcag----------tgtattgttctcacctttctcttttg----------gttgtagATGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGG
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G31780.1 (Glycine max), 3'ss of exon 7
gcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgct---attacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG-
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--------------------------------------------------catgttcattacctaagagggt-tggcattttgttgcttcatccttcagtgtagttctcacctttctgttttggttgtagaTGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77583292|gb|DV220679.1|DV220679EST: TTACTCCTACGTTTCTTTACTCAAGTGTTTCATTCCTATAATGAACCCAG GTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAG
genomic: TTACTCCTACGTTTCTTTACTCAAGTGTTTCATTCCTATAATGAACCCAGgcacacatct ... gctattacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acggtggtaagttatactgttgctagatttaattcttgccatgttgctattacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG
atttaat putative branch site (score: 4)
tagatttaattctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT