1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttagtttattgtcataatttctattggctttatttctgctggctaatcatatacagtgtttactttgcagGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAG
species | Vitis vinifera |
transcript | Vv05s0077g02310.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAG GCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACAEST: gi|77578499|gb|DV218043.1|DV218043
genomic: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAGgttagtttat ... tactttgcagGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACA
EST: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAG GCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACAEST: gi|110724126|gb|EE099691.1|EE099691
genomic: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAGgttagtttat ... tactttgcagGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACA
EST: AACAAATACGAG GCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACAEST: gi|110688178|gb|EE066434.1|EE066434
genomic: AACAAATACGAGgttagtttat ... tactttgcagGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACA
EST: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAG GCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACAEST: gi|110728878|gb|EE104832.1|EE104832
genomic: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAGgttagtttat ... tactttgcagGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACA
EST: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAG GCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACAEST: gi|110711785|gb|EE088658.1|EE088658
genomic: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAGgttagtttat ... tactttgcagGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACA
EST: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAG GCCTTGCTGTTAGCAACAA-CATACATATATGTTCTCAGC
genomic: AAGCGGAAGGCTAAAGCTCACGTTAACAGGACACATTGAACAAATACGAGgttagtttat ... tactttgcagGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGC
aatttctattggctttatttctgctggctaatcatatacagtgtttactttgcagGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAG
ggctaat putative branch site (score: 3)
tttacttt putative PPT
taatcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttattgtcataatttctattggctttatttctgctggctaatcatatacagtgtttactttgcagGCCTTGCTGTTAGCAACAAACATACATATATGTTCTCAGCTGGTGATGACAAACAAGTTAAATGCTGGGACCTTGAACAGAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG