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gtatgtcttctagtatatcaatttaattaatatatttgacaaaatatagagatcttcattaacaaaaggatttttggatgtggaattgttttcctacagATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGAGTAATTGATGCTGATGGAAATCTG
species | Vitis vinifera |
transcript | Vv05s0077g01210.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAAT ATCAGTGTAGTAACACAACGTGEST: gi|34544811|gb|CF513043.1|CF513043
genomic: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAATgtatgtcttc ... tttcctacagATCAGTGTAGTAACACAACGTG
EST: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAAT ATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGAEST: gi|351031178|gb|FQ445005.1|FQ445005
genomic: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAATgtatgtcttc ... tttcctacagATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGA
EST: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAAT ATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGAEST: gi|34549728|gb|CF517960.1|CF517960
genomic: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAATgtatgtcttc ... tttcctacagATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGA
EST: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAAT ATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGAEST: gi|351023248|gb|FQ432631.1|FQ432631
genomic: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAATgtatgtcttc ... tttcctacagATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGA
EST: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAAT ATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGA
genomic: TAATTGCAACTGGAAGGGCTCCATTCACAAATGGTCTTGGCTTGGAGAATgtatgtcttc ... tttcctacagATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGA
tatagagatcttcattaacaaaaggatttttggatgtggaattgttttcctacagATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGAGTAATTGATGCTGATGGAAATCTG
cattaac putative branch site (score: 2)
ttgttttcct putative PPT
attaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcttctagtatatcaatttaattaatatatttgacaaaatatagagatcttcattaacaaaaggatttttggatgtggaattgttttcctacagATCAGTGTAGTAACACAACGTGGTTTTATTCCTGTTGATGAGCGTATGCGAGTAATTGATGCTGATGGAAATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA