Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatatgcctttgcattttgtttatactagcttgactttgatactactaaacccacacgtaaaaatttgcagGTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGAT

Basic information

species Vitis vinifera
transcript Vv05s0077g00620.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 3'ss of exon 8
gtaagcaatatgcctttgcattttgtt--tatactagcttgactttga--tactactaaacccacacgtaaaaatttgcagGTTACACTG---ATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGAT------
|||||   | |   |   | ||| ||   | |  ||| ||   | |    |  || |||       |     ||||| |    |   | |   || | ||||| || ||||   |  |  | || |||||||||||||||||||| || || || ||||| |||||||||||  | || |||||      
gtaagttttctctgtaaacttttagtgagtttgatagtttatatatatatttttagtaaggatgatcaatgtaatttaccttgtgtgcagGCTATACTGATCCATCTAAACCTGATCTCCCTCGATTGCATGAGTGGCATTTCCGATCTGGACTGGATCGCTACATATGGATTGTGGGGATGATTTATGC

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 8
----gtaagcaatatgcctttgcattttgtttatactagcttgactt-tgatactactaaacccacacgtaaaaatttgcagGTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGAT
    ||||    ||||   ||  | ||      |   |||    |   | || |||             |  ||| ||||||| || ||||| ||| ||||  | |||  | |  |||| || ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||
gttagtaacatgtatgatattttacttcaccattgaaagcacagcagatcatgctaactggaaggtttctttaaacttgcagGATATACTGACCCAAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAGTGGCATTTTCGTTCAGGGCTTGATCGCTACATATGGATAATTGGAATGAT

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G04070.1 (Glycine max), 3'ss of exon 8
----gtaagcaatatgcctttgcattttgtttatactagcttgactttgatactactaaacccacacgtaaaaatttgcagGTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGAT
    ||||    ||||   ||  | ||   | | |  |      ||   || |||             |  ||| |||||||||| ||||| ||  ||||  | |||  | |  |||| || |||||||| |||||||| || ||||| ||||| || |||||||||||||||||||||||
gttagtaacatttatgatatttgacttcactgaaatcacagcagctc--atgctaactggaagggttctttaaacttgcagGTTATACTGACCCGAATCCTGCCAAATCACATCTTTCTCGCTTGCATGAATGGCATTTTCGTTCAGGGCTTGACCGCTACATATGGATAATTGGAATGAT

upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G06550.2 (Arabidopsis thaliana), 3'ss of exon 8
-----------------------gtaagcaatatg--cctttgcattttgtttatactagcttgactttgatactactaaacccacacgtaaaaatttgcagGTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGAT------
                        | | ||| ||   |  ||   |  ||  |  || ||   |   || | |  || ||||    |   || |||| |||||||||| |||||| |      ||||||   || || |||  ||||||||||||||||||||||| || |||||||| |||||||||||||| || ||| |      
gtaagtgagaacccaaatatttgtttaccaagataaacaatttgctcatgcct-cacaagacagctgtttagaaaacaaaacttgaaaacaacaatt-gcagGTTACAATGATCCCG------CAAAACCTCAGCTTCCCCTCTTGCATGAGTGGCATTTCCGCTCTGGACTTGATCGGTACATATGGATAATCGGGATGCTATATGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715867|gb|EE094404.1|EE094404
EST:     AATTCCTGGAGTGTTTGAATTTGTATGGAGCCCACTTACTTTCATACTAG                         GTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGT
genomic: AATTCCTGGAGTGTTTGAATTTGTATGGAGCCCACTTACTTTCATACTAGgtaagcaata ... aaatttgcagGTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttatactagcttgactttgatactactaaacccacacgtaaaaatttgcagGTTACACTGATCCAGATCCCTCAAAACAAAAGTTTTCCCGTTTGCATGAGTGGCATTTCCGCTCAGGTCTTGATCGTTACATATGGATAATTGGAATGAT
                           tactaaa  putative branch site (score: 1)
                                          taaaaattt  TA-rich tract