Sequence
atgc intronic sequence ATGC exonic sequence...ccaaatcattgatttgatatctgttctgtaactagtgttcttgggccttttgactgtaaaaccaggttacctgcctaataatggtttttatgtttaccagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0062g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G36760.1 (Glycine max), 3'ss of exon 8
------ccaaatcattgatttgatatctgttctgtaactagtgttcttgggccttttgactgtaaaaccaggttacctgcctaataatggtttttatgtttaccagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAA
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tagtttaccaattggtattctatcatattatctgtggcaaaatttctttagtaaact---tgtagaaacaaatcccttgc-tgaccata-tttttgt-ttgatcagGAAACATTTGATGCTACACGGTGGTTGGATCGGTTTCTCATTCGCCTCTGTTCAAAGTTTGGTGACTACCGCAAGGATGATCCATCATCTTTTACATTAA
upper sequence: Vv05s0062g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G00670.1 (Glycine max), 3'ss of exon 8
---ccaaatcattgatttgatatctgttctgtaactagtgttcttgggccttttgactgtaaaaccaggttacctgcctaataatggtttttatgtttaccagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAA
| |||| | | | || | ||||| | ||||| | | || |||| | | | ||| || | || |||| || | |||||| |||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||| || || |||||||||||| | || ||||||||||
tttaccaatcgatattctatcatatcatctgtggaaaaatttctttagtaaacttgctataaaccaa---tccctaactgactatcaatttttgtttgatcagGAAACATTTGATGCTACACGGTGGTTGGATCGGTTTCTCATTCGCCTCTGTTCTAAATTTGGTGACTACCGCAAGGATGATCCATCGTCTTTTACATTAA
upper sequence: Vv05s0062g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G23660.2 (Arabidopsis thaliana), 3'ss of exon 9
-----------------------------------------------ccaaatcattgatttgatatctgttctgtaactagtgttcttgggccttttgactgtaaaaccaggttacctgcctaataatggtttttatgtttaccagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAA
|||||| | || || | | | | |||||| || ||| ||| | ||| | | || | ||| | || | | || |||| || ||||||||||| || |||||||||||| |||||||||||| ||||| |||||||| || ||| |||||||||||||||| ||||| || | |
gtttattgttcacacagctgtatattagtcatatgaacttggaggatccaaattgtgtcttggaaaatactgcagggactagttaactaggg---tttatcactaagtcatgtctatatatacaattcatcatattttatccac-agGAGGGATTTGATGCTACTCGCTGGTTAGATCGGAATCTCATTCGTCTTTGTTCAAAATTTGGAGACTATAGAAAGGATGATCCAGCCTCCTTCACGCTGA
upper sequence: Vv05s0062g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G14160.2 (Arabidopsis thaliana), 3'ss of exon 8
ccaaatcattgatttg-atatctgttctgtaactagtgttcttgggcct--tttgactgtaaaaccaggttacctgcctaataatggtttttatgtttaccagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAA
|| ||| | | | ||| |||| | || | | | || ||| | | | | || | | | | | | ||| ||||| || |||||||| || |||||| |||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||||||| | || ||||| | |
-gtaacagttgctatatactcatgtcttgtactttgtttagtgatgtctactttatttttgtcatatactcacgtatgcagtg-tattatgtataacc-tcagGAGGGATTTGATGCAACTCGGTGGCTAGATCGGACTCTCATTCGTCTGTGTTCAAAATTTGGTGAATATAGAAAGGATGATCCAACCTCGTTTACGCTGA
upper sequence: Vv05s0062g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G23660.1 (Arabidopsis thaliana), 3'ss of exon 8
----ccaaatcattgatttgatatctgttctgtaactagtgttcttgggccttttgactgtaaaaccaggttacctgcctaataatggtttttatgtttaccagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAA
|||||| | || || | | | | |||||| || ||| ||| | ||| | | || | ||| | || | | || |||| || ||||||||||| || |||||||||||| |||||||||||| ||||| |||||||| || ||| |||||||||||||||| ||||| || | |
ggatccaaattgtgtcttggaaaatactgcagggactagttaactaggg---tttatcactaagtcatgtctatatatacaattcatcatattttatccac-agGAGGGATTTGATGCTACTCGCTGGTTAGATCGGAATCTCATTCGTCTTTGTTCAAAATTTGGAGACTATAGAAAGGATGATCCAGCCTCCTTCACGCTGA
upper sequence: Vv05s0062g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G05520.1 (Arabidopsis thaliana), 3'ss of exon 8
ccaaatcattgatttga-tatctgttctgtaactagtgtt-cttgggccttttgactgtaaaaccaggttacctgcctaataatggtttttatgtttac-cagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAA
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-tcattcgataatttgaatatct-ttccaccattgctttaacccaaactttgtggattttgg-ttatcaaacgtattaatttctgtcaattatgtttcctcagGAGGGATTTGATGCTACGCGATGGCTGGACCGGAACCTTATTCGTCTTTGTTCTAAATTTGGTGATTACCGGAAGGATGATCCTGCTTCATTTACTCTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713161|gb|FC062501.1|FC062501EST: CTGCTGCTGTGGTAATGGCGAGATTAACTTCTCTGAAAATGGAGACAGAG GAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGT
genomic: CTGCTGCTGTGGTAATGGCGAGATTAACTTCTCTGAAAATGGAGACAGAGgtatttccta ... tgtttaccagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccttttgactgtaaaaccaggttacctgcctaataatggtttttatgtttaccagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAA
gcctaat putative branch site (score: 3)
tttttat putative PPT
taataatggtttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccaaatcattgatttgatatctgttctgtaactagtgttcttgggccttttgactgtaaaaccaggttacctgcctaataatggtttttatgtttaccagGAAGGTTTTGATGCTACACGGTGGTTAGATCGGTCTCTCATTCGTCTCTGTTCCAAATTTGGTGATTATCGAAAGGATGATCCAGCATCCTTTACATTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
ccaaatc
- - - - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgcc