1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctttgttcagttaatatagcatcatagggcaccaattcttccatgttgctttcaaacgctctttcttgtaattctgttctgattgattcttcctgaacagGAAGGGGAAGAGGCAGGGGGAGCTACCAGTCAGAGGCACCAAGGGGGCGATATGGTGCTCGGACGTTTGGTAGGGGAAATGGTCAAGATGGAG
species | Vitis vinifera |
transcript | Vv05s0049g01940.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACACATTGAGGAACGGAGAGCAAACAGCAACAACCTATCTCGAGGAGGAA GAAGGGGTAGAGGCAGGGGGAGCTACCAGTCAGAGGCACCAAGGGGGCGAT
genomic: ACACATTGAGGAGCGGAGAGCAAACAACAATAGCTTATCTCGAGGAGGAAgtatgtactt ... tcctgaacagGAAGGGGAAGAGGCAGGGGGAGCTACCAGTCAGAGGCACCAAGGGGGCGAT
ttgctttcaaacgctctttcttgtaattctgttctgattgattcttcctgaacagGAAGGGGAAGAGGCAGGGGGAGCTACCAGTCAGAGGCACCAAGGGGGCGATATGGTGCTCGGACGTTTGGTAGGGGAAATGGTCAAGATGGAG
ttcttcct CT-rich tract
ttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgttcagttaatatagcatcatagggcaccaattcttccatgttgctttcaaacgctctttcttgtaattctgttctgattgattcttcctgaacagGAAGGGGAAGAGGCAGGGGGAGCTACCAGTCAGAGGCACCAAGGGGGCGATATGGTGCTCGGACGTTTGGTAGGGGAAATGGTCAAGATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - -agcatca
- - - - - - - - - - - - - - gcaccaa
- - - - - - - - - - - - - - - - - - - - ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg