Sequence
atgc intronic sequence ATGC exonic sequencegtgttgtgtggtgtgttcaattctgaattactggatttggttcacaatggaattacaaagtgaggaataatgtggttggctctgtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G35110.1 (Glycine max), 3'ss of exon 8
gtgttgtgtggtgtgttcaattctgaattactggatttggttcacaatggaattacaaagtgag-gaataatgtggttggctctgtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTG
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--gtgttgtggtgtgttcttttctgaattctataatttactttgggttacagttgcatattaactgcataac-tggccggtctattatttccagGCGCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTG
upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G32480.1 (Glycine max), 3'ss of exon 8
gtgttgtgtggtgtgttcaattctgaattactggatttggttcacaatggaattacaaagtgaggaataatgtggttggctctgtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTG
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--gtgttgtggtgtgttcttttctgaattctataatttactttgggttacagttacatattaacaacataactggttggtctattatttccagGCTCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTG
upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G00830.1 (Glycine max), 3'ss of exon 8
gtgttgtgtggtgtgttcaattctgaattactggatttggttcacaatggaattacaaagtgaggaataatgtggttggc--tctgtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTG
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--gtgttgtggtgtgttcttttttaagttctacagtttatacaggaatacactagtatagtaaccaataa-gtggttggtcatttttgtgtccagGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTATACCAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTG
upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G00580.1 (Glycine max), 3'ss of exon 9
gtgttgtgtggtgtgttcaattctgaattactggatttggttcac-aatggaattacaaagtgaggaataatgtggttggc--tctgtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTG
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--gtgttgtggtgtgttcttttctaagtt-ctacagtttatacatgaatgcgctagtatagtaaccaataa-gtggttggtcatctttgtgtccagGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTGTACCAAATGCAGGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTG
upper sequence: Vv05s0049g01220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 3'ss of exon 9
gtgttgtgtggtgtgttcaattctgaattactggatttggtt---cacaatggaattacaaagtgaggaataatgtggttggctctgtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTG
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gtgttgtatgcgttgttcaactttgagattcaaagttcccttatgtaagatcattgtgtgcaattcttaaaaacg-atttgactggtttctttcagGGTCACCCTTGGTTTAGAGGCACAGAATGGGGAAAATTGTATCAAATGAAAGCTGCCTTTATTCCCCAAGTTAATGATGAGTTGGACACCCAAAATTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71879891|gb|DT028946.1|DT028946EST: TATGTAATGTTGACCAGAGGCTTGGAACTAAAGGGGCAGATGAAATAAAG GCTCACCCCTGGTTTCAAGGTGTTGACTGGGACAAATTGTATCAAATTGAA
genomic: TATGTAATGTTGACCAGAGGCTTGGAACTAAAGGGGCAGATGAAATAAAGgtgttgtgtg ... gtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAA
EST:
gi|71878386|gb|DT027441.1|DT027441EST: TATGTAATGTTGACCAGAGGCTTGGAACTAAAGGGGCAGATGAAATAAAG GCTCACCCCTGGTTTCAAGGTGTTGACTGGGACAAATTGTATCAAATTGAA
genomic: TATGTAATGTTGACCAGAGGCTTGGAACTAAAGGGGCAGATGAAATAAAGgtgttgtgtg ... gtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttcacaatggaattacaaagtgaggaataatgtggttggctctgtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTG
aattacaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgttgtgtggtgtgttcaattctgaattactggatttggttcacaatggaattacaaagtgaggaataatgtggttggctctgtaaattcagGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC