Sequence
atgc intronic sequence ATGC exonic sequence...caaacacaaacacgattcttctccttttttgggtggagggatctttgcatttattgttgaaagaggttctatatttatgtccatcctcatatacatgcagTTTTCGAGCAAGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G32320.1 (Glycine max), 3'ss of exon 6
caaacacaaacacgattcttctccttttttgggtggagggatctttgcatttattgttg-aaagaggttctatatttatg--tccatcc-------tcatatacatgcagTTTTCGAGCAAGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATG
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---------atttggtctcttgtattttctggg-gtctgaataatggggagtattgtttcatatctgtttgttacttaaaatcctatccgattgtttctttgacatgcagTTTTTGAACAAGTTACCAAGAATGCAGTGCGTGGACTTTGGGCACGGCGTTCAAAGCTTAACCTGGTCGGTGCTCATATTAATGTTTTTACAGGTGAATG
upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G35290.1 (Glycine max), 3'ss of exon 1
---caaacacaaacacgattcttctccttttttgggtggagggatctttgcatttattgttgaaagaggttctatatttatgtccatcctcatatacatgcagTTTTCGAGCAAGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATG
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ttgtattctggggtctgaataatggggagtattgttagctttcatatctg--tttgttacttataatcctatttcctatctgtttgtttctttg-acatgcagTTTTTGAACGAGTCACCAAGAATGCAGTGTGTGGACTTTGGGCATGGCGTTCAAAGCTTAATCTGGTTGGTGGTCATATTAATGTTTTCACAGGTGAATG
upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 3'ss of exon 7
---------------------------------------------------------------------------caaacacaaacacgattcttctcct--tttttgggtggagggatctttgcatttattgttgaaagaggttcta---------tatttatgtccatcctcatatacatgcagTTTTCGAGCAAGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATG
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gtgagtaaaccagtttagtcactgagatatatcataaatctgttagtccttgagaaatacttctctttagctctctttactcttctatcattttcgttgggatttccaagagatgtaattttgattttcatagtttgttgtgtttcttacgtgctcttacatgggccaactttgttaaatttgaagTTTTCGAACAAGTTGCAAAGAATGCGGTGAGGGGACTATGGGCACGTCGTTCAAATCTCGACTTGGTTGGTGCTCACATCAATGTCTTTACAGGTGAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcatttattgttgaaagaggttctatatttatgtccatcctcatatacatgcagTTTTCGAGCAAGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATG
ttctatatttatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caaacacaaacacgattcttctccttttttgggtggagggatctttgcatttattgttgaaagaggttctatatttatgtccatcctcatatacatgcagTTTTCGAGCAAGTTACAAAGAATGCAGTGCATGGATTATGGGCTCGCCGATCAAAGCTGAACCTAGTTGGTGCTCATATCAATGTTTTTACAGGTGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - cacaaac
- - - - - - - - -cttctcc
- - - - - - - - - - - - - - - gggtgga
- - - - - - - - - - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagag