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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaaaggctatatctgatctttcttaattgaatgtctggataagctaacattggctttagtgctaatgtatggttttcatgaaagttcgttatctgctttcctttttacacagGTAGTTGGAGGAATAGACGATCAAATGCCATCACTTCCATCAACAACTGGAGTTGAGGTTGTATCATATTCAAAACTACTCAATCAG

Basic information

species Vitis vinifera
transcript Vv05s0020g03080.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G39540.1 (Glycine max), 3'ss of exon 8
gtataaaaggctatatctgatctttcttaattgaatgtctggataagctaacattggctttagtgctaatgtatggttttcatgaaagtt-cgttat-ctgctttcc--tttttacacagGTAGTTGGAGGAATAGACGATCAAATGCCATCACTTCCATCAACAACTGGAGTTGAGGTTGTATCATATTCAAAACTACTCAATCAG
                                | |||| || ||    |  | |  | || |     |||||    ||   ||| ||||   || || ||| |||    ||  ||   ||||||||||||| || || |||||||| |||| | |||||||| ||||||||||| ||||| |  |||||||||| ||||| ||||||
--------------------------------gtatgtgtgaattta-tggcttatgtttgaaattaaatgttcatttacaatgtaagtcatgtcatgctgatttgtagttagtatgtagGTAGTTGGAGGTATGGATGATCAAATTCCATTAGTTCCATCATCAACTGGAGTTCAGGTTATTACATATTCAAAGCTACTTAATCAG

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G28200.1 (Glycine max), 3'ss of exon 8
gtataaaaggctatatctgatctttcttaattgaatgtctggataagctaacattggctttagtgctaatgtatggttttcatgaaagttcgttatctgctttcctttttacacagGTAGTTGGAGGAATAGACGATCAAATGCCATCACTTCCATCAACAACTGGAGTTGAGGTTGTATCATATTCAAAACTACTCAATCAG
                                | |||| || ||    |  | |  | || |     ||||| |   || ||    |   | |  |    |||  ||  ||   ||||||||||||| || || |||||||| |||||| |||| ||| ||||||||||| ||||| |  |||||||||| ||||| ||||||
--------------------------------gtatgtgtgaattta-tggcttatgtttgaaattaaatgt-tcacttacaaagtaaaacatgctgatttttagttagtatgtagGTAGTTGGAGGTATGGATGATCAAATTCCATCAGTTCCTTCATCAACTGGAGTTCAGGTTATTACATATTCAAAGCTACTTAATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgctaatgtatggttttcatgaaagttcgttatctgctttcctttttacacagGTAGTTGGAGGAATAGACGATCAAATGCCATCACTTCCATCAACAACTGGAGTTGAGGTTGTATCATATTCAAAACTACTCAATCAG
  tgctaat  putative branch site (score: 2)
                           ttcgttatctgctttc  putative PPT
     taatgtat  TA-rich tract