1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgaacaacagaaattgattcttctatcctagagaagtctagaagtgctttactcagactggcatttttataatagaaaatttctcttttgttggtgccagTGTTGCAGTATTCTTATCATGGGCGCGACAACGAATCATTGCTGAAGGGGATTTGAATATCAG
species | Vitis vinifera |
transcript | Vv05s0020g02800.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATGGTTCTCCTCGACGCTGTGGCGGCCAGGGTGATATACTTTCTGGAAG TGTTGCAGTATTCTTATCATGGGCGCGACAACGAATCATTGCTGAAGGGGAEST: gi|110392805|gb|EC957246.1|EC957246
genomic: TATGGTTCTCCTCGACGCTGTGGCGGCCAGGGTGATATACTTTCTGGAAGgtaagtgatt ... ttggtgccagTGTTGCAGTATTCTTATCATGGGCGCGACAACGAATCATTGCTGAAGGGGA
EST: TATGGTTCTCCTCGACGCTGTGGTGGCCAGGGTGATATACTTTCTGGAAG TGTTGCAGTATTCTTATCATGGGCGCGACAACGAATCATTGCTGAAGGGGA
genomic: TATGGTTCTCCTCGACGCTGTGGCGGCCAGGGTGATATACTTTCTGGAAGgtaagtgatt ... ttggtgccagTGTTGCAGTATTCTTATCATGGGCGCGACAACGAATCATTGCTGAAGGGGA
gctttactcagactggcatttttataatagaaaatttctcttttgttggtgccagTGTTGCAGTATTCTTATCATGGGCGCGACAACGAATCATTGCTGAAGGGGATTTGAATATCAG
tttctcttttgtt CT-rich tract
atttttataatagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaacaacagaaattgattcttctatcctagagaagtctagaagtgctttactcagactggcatttttataatagaaaatttctcttttgttggtgccagTGTTGCAGTATTCTTATCATGGGCGCGACAACGAATCATTGCTGAAGGGGATTTGAATATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
-gaacaac
- - - - - aaattga
- - - - - - - - - - -tctatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagaa