Sequence
atgc intronic sequence ATGC exonic sequence...attcttttatatcacttgtataagtagtaaatgtctaagaaaagacaagggctatagttttgaggagaattctcatactttctttgttaacaaactccagGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01960.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 7
attcttttatatcacttgtataagtagtaaatgtctaagaaaagacaa--gggctatagttttgaggagaattctcatactttctttgttaacaaactccagGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAA
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----------------------gttagttaagcccaaacaaaccctcattagttaacggttttatgctcagtgttaacttggatgttggtgactgattccagGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAG
upper sequence: Vv05s0020g01960.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 3'ss of exon 8
attcttttatat-cacttgtataagtagtaaatgtctaagaaaagacaagggctatagttttgaggagaattctcatactttctttgttaacaaactccagGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAA
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--------gtctgctcctatgtgatttagtcatgccacagagtagtttgttttttatgtagatatgaaaatcattgtggcaagcttgt-gatgttatgcagACACTCAACTGACAGAGAAGTTGCTATCATGATACTCATGGCGTACCTTTCATATATGCTGTCGATG
upper sequence: Vv05s0020g01960.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G027851_T03 (Zea mays), 3'ss of exon 5
attcttttatatcacttgtataagtagtaaatgtctaagaaaagacaagggctata-gttttgagga------gaattctcatactttctttgttaacaaactccagGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAA
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-------------gtgagtcaaactaggaaacacttactagtcaacgatg-ttatacacttcgagaacatcaagtattaacttggctgcttgctgtcctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAG
upper sequence: Vv05s0020g01960.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 7
----------attcttttatatcacttgtataagtagtaaatgtc--taagaaaagacaagggctatagttttgaggagaattctcatactttctttgttaacaaactccagGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAA
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gttaattctaattaagctccattaattttcaatatgcttaaccacatcaatgaaatatatcag-tacattgttagctattattcccttattcattttac-gacaaatcccagGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCGTATATGCTGTCTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110696446|gb|EE072580.1|EE072580EST: CGCATATATTATTAAAAAGCTCTATTTTGGAAG GCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTC
genomic: CGCATATATTATTAAAAAGCTCTATTTTGGAAGgtttgtaatt ... caaactccagGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caagggctatagttttgaggagaattctcatactttctttgttaacaaactccagGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAA
tgttaac putative branch site (score: 2)
tatagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attcttttatatcacttgtataagtagtaaatgtctaagaaaagacaagggctatagttttgaggagaattctcatactttctttgttaacaaactccagGCATTCGACTGATCGGGAGGTTGCAATCATGATACTCATGGCTTACCTTTCGTATATGCTGGCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - cacttgt
- - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggagaa