1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtgttgtagtcttataggttattcaactatttctaaaaagttgaaaagttggtactgttctgacacttccacactgtgtttccctagTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACAATGCATTGTGAATGTTACAATGAGATGGTAAGCCATGACAA
species | Vitis vinifera |
transcript | Vv05s0020g01800.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAG TATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACAEST: gi|161721536|gb|FC069746.1|FC069746
genomic: ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAGgtttgtgttg ... gtttccctagTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACA
EST: ATTCGTGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAG TATCTTTTTGACTCACTCAAGGATACCACAGTCCTGGTTTGTGGACACACGEST: gi|161716059|gb|FC067162.1|FC067162
genomic: ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAGgtttgtgttg ... gtttccctagTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACA
EST: ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAG TATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACCCA
genomic: ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAGgtttgtgttg ... gtttccctagTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACA
ctaaaaagttgaaaagttggtactgttctgacacttccacactgtgtttccctagTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACAATGCATTGTGAATGTTACAATGAGATGGTAAGCCATGACAA
ttctgac putative branch site (score: 2)
tgtttccct putative PPT
ttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgttgtagtcttataggttattcaactatttctaaaaagttgaaaagttggtactgttctgacacttccacactgtgtttccctagTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACAATGCATTGTGAATGTTACAATGAGATGGTAAGCCATGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG