Sequence
atgc intronic sequence ATGC exonic sequencegtaaacccaagacctcctaattttttagctctaccttatttcatctcatttactgaaatggtttctgtatttctgttttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 3'ss of exon 8
gtaa-acccaagacctcctaattttttagctctaccttatttcatctcatttactgaaatggtttctgtatttctgttttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
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gtaacagatttgatatccatattctcaattgatagatcatgttggttttccttgtatgatttgtgtaacatgttacacttgaagGTTCTTCGTCCATTTCTGCTTCGGAGGCTTAAATCTGATGTTGAGAAAGGTTTACCACCAAAAAAGGAAACTATACTTAAAGTTGGAATGTCTGAGATGC
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G10370.1 (Glycine max), 3'ss of exon 8
gtaaacc-caagacctcctaat--tttttagctctaccttat-ttcatctcatttactgaaatggtttctgtatt-tctgt-tttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
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gtaaattacagaaccttcttttgattgttggaagtccttgatgttaatctggcacataattgtcattttcattttctatgtatatcaagGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGATTGCCACCAAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAAATGC
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G02640.1 (Glycine max), 3'ss of exon 8
gtaaaccc-aagacctcctaattttttagc-tctacc-ttatttcatctcatttactgaaatggtttctgtatttctgttttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
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gtaagccttgaagcttcttcattgttaagggtctattgtgataaaatgttgtataataatgttttcattttctgtgtgtaattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G38050.2 (Glycine max), 3'ss of exon 8
gtaaaccc--aagacctcctaattttttagc-tctacctt-atttcatctcatttactgaaatggtttctgtatttctgttt--tttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
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gtaagccttgaagcttctttgattgtttagggtctactgtgataaaatgttatataat--aatgttttcaatttctgtgcatgattaagGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGC
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G28720.1 (Glycine max), 3'ss of exon 8
gtaaacc-caagacctcctaat--tttttagctctaccttat-ttcatctcatttactgaaatggtttctgtatt-tctgt-tttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
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gtaaattacagaaccttcttttgattgttggaagtccttaatgttaatctggcacataattgtcattttcattttctatgtatatcaagGTCCTCCGCCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACTATTCTTAAGGTAGGCATGTCCCAAATGC
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaaacccaagacctcctaattttttagctctaccttatttcatctcatttactgaaatggtttctgtatttctgttttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
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---------gtatgtactcatatttta--tcaaggttattc--tctaagttcttatgctaatcatt-tacctcatctttgtagGTTCTGCGACCATTTCTTCTTCGGAGGTTAAAATCAGATGTAGAGAAAGGCTTACCTCCAAAAAAGGAGACAATACTCAAAGTTGGCATGTCTCAAATGC
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaaacccaagacctcctaattttttagctctaccttatttcatctcatttactga--aatggtttctgtatttctgttttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
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gtatggatgcacccattccttgcattgagtttattctgttctgtgtgagtcgtaggttaattgctttcatgtatct---ttttagGTTCTTCGACCATTTCTTCTTCGAAGACTAAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAGAAGGAGACCATACTTAAAGTTGGTATGTCTCAGATGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctaccttatttcatctcatttactgaaatggtttctgtatttctgttttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
tatttctgtttttt CT-rich tract
tatttctgtttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaacccaagacctcctaattttttagctctaccttatttcatctcatttactgaaatggtttctgtatttctgttttttagGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA