1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taagttgcatgagaatgaaaagtaaaattttcatatcaacttcttagttggtttaattgccaatcaattgtgtatttgatcactccttgacaaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTTCTGGTCGTTTAGACCGAAAAATTGAGTTCCCTCATCCTTCTGAAGATG
species | Vitis vinifera |
transcript | Vv05s0020g01180.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAG GTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTEST: gi|30133923|gb|CB919262.1|CB919262
genomic: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtatt ... caaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGT
EST: TGGAATTGCTCAATCAGCTTGACGGTTTTAGTAGTGATGACCGTATAAAG GTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTEST: gi|110717892|gb|EE094156.1|EE094156
genomic: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtatt ... caaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGT
EST: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAG GTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTEST: gi|110360884|gb|EC924326.1|EC924326
genomic: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtatt ... caaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGT
EST: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAG GTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTEST: gi|351026518|gb|FQ428530.1|FQ428530
genomic: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtatt ... caaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGT
EST: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAG GTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTEST: gi|351019753|gb|FQ439570.1|FQ439570
genomic: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtatt ... caaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGT
EST: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAG GTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTEST: gi|351019480|gb|FQ429615.1|FQ429615
genomic: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtatt ... caaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGT
EST: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAG GTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTEST: gi|110699646|gb|EE076827.1|EE076827
genomic: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtatt ... caaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGT
EST: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAG GTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGGCGEST: gi|351027526|gb|FQ446689.1|FQ446689
genomic: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtatt ... caaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATG-CG
EST: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAG GTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGT
genomic: TGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtatt ... caaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGT
agttggtttaattgccaatcaattgtgtatttgatcactccttgacaaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTTCTGGTCGTTTAGACCGAAAAATTGAGTTCCCTCATCCTTCTGAAGATG
ccttgac putative branch site (score: 4)
tttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagttgcatgagaatgaaaagtaaaattttcatatcaacttcttagttggtttaattgccaatcaattgtgtatttgatcactccttgacaaactgcagGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTTCTGGTCGTTTAGACCGAAAAATTGAGTTCCCTCATCCTTCTGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -catgaga
- - - - - - - - -aaaagta
- - - - - - - - - - - - - - - - - - caacttc
- - - - - - - - - - - - - - - - - - - - - - tagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaatca