Sequence
atgc intronic sequence ATGC exonic sequence...aatgtcctaactgatttattttaagaatgttgagtggtcttctttctcattctgtttaattgctggttgaaactttttgatcattggttgataatgccagATATATTCCAAGAAGCTGGTCTTCCTCTCTGGCTGCGCCCTTACGAAGTCCTTGTTACTTCTTCCTACACAGCTCTCATTGAAACCATTCCAGATACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 9
---------aatgtcctaactgatttattttaagaatgttgagtggtcttctttctcattctgtttaattgctggttgaaactttttgatcattggttgataatgccagATATATTCCAAGAAGCTGGTCTTCCTCTCTGGCTGCGCCCTTACGAAGTCCTTGTTACTTCTTCCTACACAGCTCTCATTGAAACCATTCCAGATACA
|| || | ||| || | | || | || | ||| | | || || || || ||| |||||| | | ||||||||||| |||||||||||||| || ||||||||||||||||| || ||||| | ||||||||| ||||| ||||| |||||||| |||||||||||
ctatattctgata-ccagatgagattaccctagtaggatgcagcagactcttctctgtgtttcttgtcatgttgctt---act-----atcattacattttgatgccagATATTTTCCAAGAAGCTGGCCTACCTCTCTGGCTGCGCCCATATGAAGTGTTATGTACTTCTTCTTACACTGCTCTTATTGAAACAATTCCAGATACG
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G16620.1 (Glycine max), 3'ss of exon 10
---aatgtcctaactgatttattttaagaatgttgagtggtcttc---tttctcattctgtttaattgctggttgaaactttttgatcattggttgataatgccagATATATTCCAAGAAGCTGGTCTTCCTCTCTGGCTGCGCCCTTACGAAGTCCTTGTTACTTCTTCCTACACAGCTCTCATTGAAACCATTCCAGATACA
| | | | || | || || | ||| | | | | | || | | ||||| ||| | |||| || | |||||||| | | |||| |||||| |||||||||||||| || || |||||||||||||| || ||||| | |||||| || ||||||||||| |||||||| |||||||||||
tttattatgtt--ctaaattcttatgagagtttaaaccacaatacaaacttttgtctgtgtttcattacatgttg----cttataatcattggattttgatgctagATATTTTCCAAGAAGCTGGCCTACCCCTCTGGCTGCGCCCATATGAAGTTTTGTGTACTTCATCTTACACAGCTCTTATTGAAACAATTCCAGATACG
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 9
------aatgtcctaa--ctgatttattttaagaatgttgagtggtcttctttctcattctgtttaattgctggttgaaactttttgatcattggttgataatgccagATATATTCCAAGAAGCTGGTCTTCCTCTCTGGCTGCGCCCTTACGAAGTCCTTGTTACTTCTTCCTACACAGCTCTCATTGAAACCATTCCAGATACA
|| | || | | ||| || | | || | || | ||| | | || || || || ||| |||||| | | || |||||||| |||||||||||||| || ||||||||||||||||| || ||||| | ||||||||| ||||| ||||| |||||||| ||||| |||||
ttttactatattctgataccaggttaccctagtaggatgaagcagactcttctctgtgtttcttgtcatgttgctt---act-----atcattacattttgataccagATATTTTCCAAGAAGCTGGCCTACCTCTCTGGCTGCGCCCATATGAAGTATTATGTACTTCTTCTTACACTGCTCTTATTGAAACAATTCCTGATACG
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G32460.1 (Glycine max), 3'ss of exon 8
---aatgtcctaa---ctgatttattttaagaatgttgagtggtcttctttctcattctgtttaattgctggttgaaactttttgatcattggttgataatgccagATATATTCCAAGAAGCTGGTCTTCCTCTCTGGCTGCGCCCTTACGAAGTCCTTGTTACTTCTTCCTACACAGCTCTCATTGAAACCATTCCAGATACA
|||| |||| || || | || | | | | || | ||| | ||||| ||| | |||| || ||||| || | | |||| |||||| ||||||||||||||||| || || ||||| ||||| || ||||| | |||||| || ||||||||||| |||||||| |||||||||||
tattatgttctaaattcttatgtgagtttaaaccacaatgcagactgttgtctg--tgtgtttcattacatgttg----cttaaaatcatcggattttgatgctagATATTTTCCAAGAAGCTGGTCTACCCCTTTGGCTCCGCCCATATGAAGTTTTGTGTACTTCGTCTTACACAGCTCTTATTGAAACAATTCCAGATACG
upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S263_81V6.1 (Physcomitrella patens), 3'ss of exon 8
-aatgtcctaact-gatttattttaagaatgttgagtggtcttctttctcattctgtttaattgctggttgaaactttttgatcattggttgataatgc---cagATATATTCCAAGAAGCTGGTCTTCCTCTCTGGCTGCGCCCTTACGAAGTCCTTGTTACTTCTTCCTACACAGCTCTCATTGAAACCATTCCAGATACA
||||| || | || | ||| ||| | | |||| |||| | ||| | | | | | || |||| ||| || |||| | ||||||| ||||| |||||||| |||||||| ||| |||| || || || || ||||| || ||||| |||||||||| |||||||||||| || ||
aaatgtgttatttagaacaaattttagatca--aatttatcttatttcagtgattattt---ttcaaatatattcattctgatgatttgtgtataaaacatacagATATCTTCCAGGAAGCTGGCCTTCCTCTTTGGTTGCGTCCGTATGAGGTGCTTGTCACATCTTCACACACAGCTCTGATTGAAACCATTTACGACACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcattctgtttaattgctggttgaaactttttgatcattggttgataatgccagATATATTCCAAGAAGCTGGTCTTCCTCTCTGGCTGCGCCCTTACGAAGTCCTTGTTACTTCTTCCTACACAGCTCTCATTGAAACCATTCCAGATACA
tgtttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgtcctaactgatttattttaagaatgttgagtggtcttctttctcattctgtttaattgctggttgaaactttttgatcattggttgataatgccagATATATTCCAAGAAGCTGGTCTTCCTCTCTGGCTGCGCCCTTACGAAGTCCTTGTTACTTCTTCCTACACAGCTCTCATTGAAACCATTCCAGATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
aatgtcc
- - - - - - - - - - - - - - - tgagtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgg