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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgactgaaccctcacttttccaaaaagtaaaaaggaaaaacaagcacaggcacacacacacacacacacacaagagagaggagatggaaaaatgacagatgaggatctgctgcagttagcatttcatgaaaagcattttcgattttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAG

Basic information

species Vitis vinifera
transcript Vv04s0023g03620.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G147671_T01 (Zea mays), 3'ss of exon 8
gtatgtgactgaaccctcacttttccaaaaagtaaaaaggaaaaacaagcacaggcacacacacacacacacacacaagagagaggagatggaaaaatgacagatgaggatctgctgcagttagcatttcatgaaaagcattttcgattttgtg----cagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAG
                                                                        |   |  |      |  |      || |||| ||    |  ||||||| |   ||    |      | ||||    | |       |||||||| || ||||| ||||||||||| || || ||||||||||| |||||  |||| |   ||  ||||
----------------------------------------------------------------------gtatgtattattcttaaactaatggcat-acaggtgcattttagctgcagcttcaataatttattggccctttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G36990.1 (Glycine max), 3'ss of exon 8
gtatgtgactgaaccctcacttttccaaaaagtaaaaaggaaaaacaagcacaggcacacacacacacacacacacaagagagaggagatggaaaaatgacagatgaggatctgctgcagttagcatttcatgaaaagcattttcgattttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAG
                     | || || || |   | |  |  |   |    |  | |||  | |   ||     |   |    |   |   || ||   ||||   ||||||||| | ||        | |  |   |||   |  ||| |||||||||| || |||||||| ||||| ||||| ||||| |||||||| || |||||||||||| |||| |||
------------------gtatgtctaataaatcccatg--attatttgttatgttaaacattccc---catgattatttgttttgttcttttaacatagtagatt--gatctgctgtattttatgcactaagtgata-attggtgggtttttgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G08290.1 (Glycine max), 3'ss of exon 8
gtatgtgactgaaccctcacttttccaaaaagtaaaaaggaaaaacaagcacaggcacacacacacacacacacacaagagagaggagatggaaaaatgacagatgaggatctgctgcagttagcatttcatgaaaagcattttcgattttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAG
                                                          |  |  | | | |  |       |   |   ||      | ||| |    ||||||||| | || |      | |  |    |  | | || ||  |||||||| || |||||||| ||||| ||||| ||||| |||||||| || |||||||||||| |||| |||
--------------------------------------------------------gtatgccta-ataaattccatgattatttgttttgttcttttaacatagattgatctgctgtattttgtgcactaagcgataattcatgggttctg--cagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCCATGCAAAATCAGTCTGAG

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 8
gtatgtgactgaaccctcacttttccaaaaagtaaaaaggaaaaacaagcacaggcacacacacacacacacacacaagagagaggagatggaaaaatg-acagatgaggatctgctgcagttagcatttca-tgaaaagcattttcgattttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAG
                                                          |     | | |  ||   ||  |    | | |    ||||| |  ||| || ||      || |  |   | || |||| |  |||      ||  |||||||||| || |||||||| |||||||| || |||||||||||||| || ||| |||||||| |||| |||
--------------------------------------------------------gtatgtctataaatcca-gtaaatgttccgtgttctttaaatgtattgat-agaatgattgacaatatgttctgcactgaataatattcgttgcttc-tgcagCTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAG

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G05250.2 (Glycine max), 3'ss of exon 8
gtatgtgactgaaccctcacttttccaaaaagtaaaaaggaaaaacaagcacaggcacacacacacacacacacacaagagagaggagatggaaaaatgacagatgaggatctgctgcagttagcatttca-tgaaaagcattttcgattttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAG
                                                          |     | | |  ||   ||         | |    |||||    |  || ||      || |  |   || | |||| |  |||      ||  |||||||||| || |||||||| ||||| || || |||||||||||||| || |||||||||||| |||| |||
--------------------------------------------------------gtatgtctataaatcca-gtaaattttccatgttctttaaatgtattaatagaatgattgacaatatgttcttaactgaataatattcattgcttc-tgcagCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71884542|gb|DT033597.1|DT033597
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|30137292|gb|CB922630.1|CB922630
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|30130168|gb|CB915507.1|CB915507
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|110425434|gb|EC991819.1|EC991819
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|110690274|gb|EE067240.1|EE067240
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|351049150|gb|FQ449872.1|FQ449872
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|110721698|gb|EE098992.1|EE098992
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCCTGCATCT                         CTTCCAGG-GTTGACCCCAATGATTCCTTC-GTCAAAAATTTGCTAGCGTC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGAT-CCTTCAGTCAAAGATTTGCTAGCATC
EST: gi|110684657|gb|EE062188.1|EE062188
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|30137146|gb|CB922484.1|CB922484
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|71882495|gb|DT031550.1|DT031550
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|110693944|gb|EE070616.1|EE070616
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|110689984|gb|EE066684.1|EE066684
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|110384926|gb|EC949397.1|EC949397
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|110386665|gb|EC951280.1|EC951280
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|34362336|gb|CF403921.1|CF403921
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC
EST: gi|110409069|gb|EC974725.1|EC974725
EST:     TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCT                         CTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCGTCC
genomic: TGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTgtatgtgact ... ttttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgaggatctgctgcagttagcatttcatgaaaagcattttcgattttgtgcagCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAG
                       atttcat  TA-rich tract