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gtatggttttctttgtgagatctttgtggcagaatatacataattgttttcattactggtcaaaaaatgatgtctcctgctatagGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAATTTGATGCTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAA
species | Vitis vinifera |
transcript | Vv04s0023g03420.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGG GCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAAEST: gi|161714014|gb|FC064089.1|FC064089
genomic: ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGgtatggtttt ... cctgctatagGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAA
EST: ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGG GCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTEST: gi|30255725|gb|CB971857.1|CB971857
genomic: ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGgtatggtttt ... cctgctatagGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCT
EST: ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGG GCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAA
genomic: ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGgtatggtttt ... cctgctatagGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAA
agaatatacataattgttttcattactggtcaaaaaatgatgtctcctgctatagGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAATTTGATGCTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAA
tctcctgct CT-rich tract
ataattgttttcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggttttctttgtgagatctttgtggcagaatatacataattgttttcattactggtcaaaaaatgatgtctcctgctatagGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAATTTGATGCTATCGATGTGGATAAAAATGGCTCTATTAGCCTTGAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA