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...tccaaaatatctcgtctctattcttgtgtcaagcaatttgatgttatgtggttcattcattcagtgtataatgatctcatatttcttgttttctattcagGATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAG
species | Vitis vinifera |
transcript | Vv04s0023g02970.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACGGTTTACTGTTGGTGGTCAGCATATTCCCTTTGGTGCATCACCACAG GATGTGTGGACTGAATTEST: gi|110716734|gb|EE091976.1|EE091976
genomic: TACGGTTTACTGTTGGTGGTCAGCATATTCCCTTTGGTGCATCACCACAGgtaactttag ... ttctattcagGATGTGTGGACTGAATT
EST: TACGGTTTACTGTTGGTGGTCAGCATATTCCCTTTGGTGCATCACCACAG GATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAGEST: gi|110698037|gb|EE075591.1|EE075591
genomic: TACGGTTTACTGTTGGTGGTCAGCATATTCCCTTTGGTGCATCACCACAGgtaactttag ... ttctattcagGATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAG
EST: TACGGTTTACTGTTGGTGGTCAGCATATTCCCTTTGGTGCATCACCACAG GATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAGEST: gi|30329939|gb|CD013201.1|CD013201
genomic: TACGGTTTACTGTTGGTGGTCAGCATATTCCCTTTGGTGCATCACCACAGgtaactttag ... ttctattcagGATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAG
EST: GGTTTACTGTTGGTGGTCAGCATATTCCCTNTGGTGCATCACCACAG GATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAG
genomic: GGTTTACTGTTGGTGGTCAGCATATTCCCTTTGGTGCATCACCACAGgtaactttag ... ttctattcagGATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAG
atgtggttcattcattcagtgtataatgatctcatatttcttgttttctattcagGATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAG
tttcttgttttctatt CT-rich tract
atatttcttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaaatatctcgtctctattcttgtgtcaagcaatttgatgttatgtggttcattcattcagtgtataatgatctcatatttcttgttttctattcagGATGTGTGGACTGAATTAGGCCGTCCTTGTGGAATCCATCAAAAGCAG
- caaaata
- - - - - - - - - - - - - - tcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - -cattcat