Sequence
atgc intronic sequence ATGC exonic sequencegtaagacagaagtataaagtaaaccgaacttattctgtgccttttttaaactattttctctagatgatactggtaattcatgatgtaatcatctttaaatcagGATAGGAGAGAAGATACTTTGCTTAAGTTGGCACACTTCAGGCGGCACAAGAGGAAAACATTGAAGAAGACTCAAGGGAAAAGTACAAATTATCCTTTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G37580.1 (Glycine max), 3'ss of exon 8
gtaagacagaagtataaagtaaaccgaacttattctgtgccttttttaaactattttctctagatgatactggtaattcatgatgtaatcatctttaaatcagGATAGGAGAGAAGATACTTTGCTTAAGTTGGCACACTTCAGGCGGCACAAGAGGAAAACATTGAAGAAGACTCAAGGGAAAAGTACAAATTATCCTTTCC
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-------------gtacatttatcaaccttgattatccttctgtactaag--gcttaatcttaat--tactgtccgttcttga-ataaatatgttta--tcagGCTAGGAGAGAAGATACTTTATTGAAGCTTGCCCACTTCAGGCGGCACAAGAGGAAAACATTGAAGAAAACACCCGGAAAGGCTATGAGTTACCCTTTTC
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G07720.1 (Glycine max), 3'ss of exon 8
gtaagacagaagtataaagtaaaccgaactt-attctgtgccttttttaaactattttctctagatgatactggtaatt--catgatgtaatcatctttaaatcagGATAGGAGAGAAGATACTTTGCTTAAGTTGGCACACTTCAGGCGGCACAAGAGGAAAACATTGAAGAAGACTCAAGGGAAAAGTACAAATTATCCTTTCC
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---------gtacattatatttgtcaaccttgattatccttctgtactaaggcttaatat-taattactgtctgtacttgacattatataaacatgtttt--tcagGCTAGGAGAGAAGATACTTTATTTAAGCTTGCCCACTTCAGGCGGCACAAGAGAAAAGCATTGAAGAAAACACCTGGAAAGGCTATAAGTTACCCTTTTC
upper sequence: Vv04s0023g02750.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G51050.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagacagaagtataaagtaaaccgaacttattctgtgccttttttaaactattttctctagatgatactggtaattcatgatgtaatcatctttaaatcagGATAGGAGAGAAGATACTTTGCTTAAGTTGGCACACTTCAGGCGGCACAAGAGGAAAACATTGAAGA---AGACTCAAGGGAAAAGTACAAATTATCCTTTCC
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-------------gtaagtcttatgcctcctactacatgc-ttcgttagtgtaatatattagaaaaattgtttcaaagtacactgt---tgtctttgcatcagGACCGACGTGAAGATACATTATTGAAGCTTGCTCATTTCAGGCGACACAAGAGGAAAACATTGAAGAAGCAGGCTGGTAGTAAGTCTACAGCTTATCCGT--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactattttctctagatgatactggtaattcatgatgtaatcatctttaaatcagGATAGGAGAGAAGATACTTTGCTTAAGTTGGCACACTTCAGGCGGCACAAGAGGAAAACATTGAAGAAGACTCAAGGGAAAAGTACAAATTATCCTTTCC
tcatcttt CT-rich tract
taatcatctttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagacagaagtataaagtaaaccgaacttattctgtgccttttttaaactattttctctagatgatactggtaattcatgatgtaatcatctttaaatcagGATAGGAGAGAAGATACTTTGCTTAAGTTGGCACACTTCAGGCGGCACAAGAGGAAAACATTGAAGAAGACTCAAGGGAAAAGTACAAATTATCCTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG