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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcattccttttggggcagtgtcttatttgtggcttcccaaaaaaaaaagaaaaataataataatctaaaggagccttgtatatgtttatgtcatctgttagctgatagttgcttctcatgctgttgggttttgttttcttttcagGTTATTCGAGCTCGATTGCAG

Basic information

species Vitis vinifera
transcript Vv04s0023g02600.t01
intron # 8
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatctgttagctgatagttgcttctcatgctgttgggttttgttttcttttcagGTTATTCGAGCTCGATTGCAG
         agctgat  putative branch site (score: 4)
                                      ttttgttttcttttc  putative PPT
                                      ttttgttttctttt  TA-rich tract