1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atttggatagatgagttggttatgtcatacaaacttgctagacattcttgcttccctccattttttttaacagaatcaattttatggtgtcctgctgcagGTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCCCTCATCCAGGAAGCCCTCTAGCAGCTGTAATCGTTTCACCATCATTTTG
species | Vitis vinifera |
transcript | Vv04s0023g01800.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTCGAATCTGTG GTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCCEST: gi|30320677|gb|CD003939.1|CD003939
genomic: GGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTCGAATCTGTGgtaagcacct ... cctgctgcagGTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCC
EST: GGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTTGAATCTGTG GTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCCEST: gi|30125200|gb|CB910539.1|CB910539
genomic: GGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTCGAATCTGTGgtaagcacct ... cctgctgcagGTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCC
EST: CTAACGTTGCCTTTTGTTGAATCTGTG GTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCCEST: gi|18459211|gb|BM437489.1|BM437489
genomic: CTAACGTTGCCTTTTGTCGAATCTGTGgtaagcacct ... cctgctgcagGTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCC
EST: GGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTTGAATCTGTG GTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCCEST: gi|30321195|gb|CD004457.1|CD004457
genomic: GGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTCGAATCTGTGgtaagcacct ... cctgctgcagGTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCC
EST: GGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTTGAATCTGTG GTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCC
genomic: GGGGTTTAATGCTCGAACATCCACTAACGTTGCCTTTTGTCGAATCTGTGgtaagcacct ... cctgctgcagGTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCC
tcttgcttccctccattttttttaacagaatcaattttatggtgtcctgctgcagGTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCCCTCATCCAGGAAGCCCTCTAGCAGCTGTAATCGTTTCACCATCATTTTG
ttttaac putative branch site (score: 2)
tcctgct putative PPT
attttttttaacagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttggatagatgagttggttatgtcatacaaacttgctagacattcttgcttccctccattttttttaacagaatcaattttatggtgtcctgctgcagGTTGGGAGCACTGATTGTGTGATGGGACTTCCGAAAGCTTTAACAGAATCCCTCATCCAGGAAGCCCTCTAGCAGCTGTAATCGTTTCACCATCATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- -tggatag
- - - - - - gagttgg
- - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - -cttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagaa