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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcgctttgcaggttccctaaatcatgtattttgaagcatggatgaaactaattagatgttgggaacatggctggaattatttagGTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATG

Basic information

species Vitis vinifera
transcript Vv04s0023g01780.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G06340.1 (Glycine max), 3'ss of exon 7
------gtgagtttcgctttgcaggttccctaaatca--tgtattttgaagcatggatgaaactaattagatgttgggaacatggctggaattatttagGTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATG
      ||   |   |  | |    ||  || |||||  || ||||  ||   |||||   |  ||||| || |||   | ||| ||      || |||||     |||||||||| ||    |||||||||||| |||||||||| |||||||| || ||||| |||||||||
gttagtgttgttcgtgactcgtgaatttgctcaatcaagtggatttataaaggtggatcttagcaattaaattttgtagatatgactta---catatagGTGGCTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATATAAAACTTTCATG

upper sequence: Vv04s0023g01780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G25390.1 (Glycine max), 3'ss of exon 7
------gtgagtttcgctttgcaggttccctaaatca--tgtattttgaagcatggatgaaactaattagatgttgggaacatggctggaattatttagGTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATG
      ||   |   |  |||    ||  || ||||   || ||||| ||   |||||      ||||| || |||   | ||| ||      || |||||     |||||||||| ||    |||||||||||| |||||||||| |||||||| || || || |||||||||
gttagtgttgttcgtgacttgtgaattttctcaatcgagtggatttttaaaggtggatcttggcaattaaattttgtagatatgactaa---catatagGTGACTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATACAAAACTTTCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaagcatggatgaaactaattagatgttgggaacatggctggaattatttagGTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATG
                aactaat  putative branch site (score: 2)
                                             aattattta  TA-rich tract