Sequence
atgc intronic sequence ATGC exonic sequence...cgtttttatatattgctcagtagcaggcatgctgatgctaccaatgtttatttgaaggattttatgctaatcagtctagttttctccacctgatttgcagATTGGGGACATAATATTGATGTAGTTGGGTTTTGTTTCCTTGACCTGGCATCAAATTATGTACCCCCAGAGTCACTTGTGGAATGGCTTGACCTTGACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g00050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G47490.1 (Glycine max), 3'ss of exon 6
---cgttttta-tatattgctcagtagcaggcatgctgatgctaccaatgtttatttgaaggattttatgctaatcagtctagttttctccacctgatttgcagATTGGGGACATAATATTGATGTAGTTGGGTTTTGTTTCCTTGACCTGGCATCAAATTATGTACCCCCAGAGTCACTTGTGGAATGGCTTGACCTTGACAA
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tccagtttttgctctctctttctgacctgggttttcctggacttgagctgttt-cttgaaggatattgtgacaatctaattgtgtttt---acttgatctgcagACTGGGGACCTAAGATTGATGTGGTTGGATTTTGTTTCCTTGACCTTGCTTCAAATTATGTACCACCAAAATCGCTAGTAGATTGGCTTGAAGAGGGAGA
upper sequence: Vv04s0023g00050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G38830.1 (Glycine max), 3'ss of exon 7
----cgtttttatatattgctcagtagcaggcatgctgatgctaccaatgtttatttgaaggattttatgctaatcagtctagttttctccacctgatttgcagATTGGGGACATAATATTGATGTAGTTGGGTTTTGTTTCCTTGACCTGGCATCAAATTATGTACCCCCAGAGTCACTTGTGGAATGGCTTGACCTTGACAA
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tccagttttttctctctctttctgacctgggttttcctggactctagttgttt-tttgaaggatgttgtgacaatctaattgtgtttt---acttgatctgcagACTGGGGACCTAAGATTGATGTCGTTGGATTTTGTTTCCTTGACCTTGCTTCAAATTATGTACCACCAAAATCGCTAGTAGATTGGCTTGAAGAGGGAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttatttgaaggattttatgctaatcagtctagttttctccacctgatttgcagATTGGGGACATAATATTGATGTAGTTGGGTTTTGTTTCCTTGACCTGGCATCAAATTATGTACCCCCAGAGTCACTTGTGGAATGGCTTGACCTTGACAA
ttttctccacct CT-rich tract
attttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgtttttatatattgctcagtagcaggcatgctgatgctaccaatgtttatttgaaggattttatgctaatcagtctagttttctccacctgatttgcagATTGGGGACATAATATTGATGTAGTTGGGTTTTGTTTCCTTGACCTGGCATCAAATTATGTACCCCCAGAGTCACTTGTGGAATGGCTTGACCTTGACAA
- - - - - - - - - - - - - gcatgct
- - - - - - - - - - - - - - - - - - gctacca