Sequence
atgc intronic sequence ATGC exonic sequence...cttcattcagtatttccttcccatgaatactgaatttaagaagtcctgcttcctcgtttatgttatgattttgaagcatatattattttttgattgacagGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACCAGTCACTTCTGTTCCAAATCAAAATTCTGAGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G34030.2 (Glycine max), 3'ss of exon 9
--cttcattcagtatttccttcccatgaatactgaatttaagaagtcctgcttcctcgtttatgttatgattttgaagcatatattattttttgattg---acagGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACCAGTCACTTCTGTTCCAAATCAAAATTCTGAGCTG
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ccctggattccatg---cattgcaggggcttcatagctccaggctgcc--ctttttcatttgaaaaaaggtgtttagttgttttttttcttttctttttttgcagGGTAGTACTGTGATCTTGTCTGGTCCTTCAGGTCCGCCAGTAACATCTGTTCCTAATCAGAATTCTGAACTG
upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G15820.1 (Glycine max), 3'ss of exon 5
cttcattcagtatttccttcccatgaatactgaatttaagaagtcctgcttcctcgtttatgttatgattttgaagcatatattat---tttttgattgacagGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACCAGTCACTTCTGTTCCAAATCAAAATTCTGAGCTG
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--ccctggattccatgcattgcaggagcttcatagc-accatgctaccctttttcatttgagataaaatgtttacttgtcttttttgtcttctttttttgcagGGTAGTACTGTGATCTTGTCTGGTCCTTCAGGTCCACCAGTAACAACTGTTCCTAATCAGAATTCTGAACTG
upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G25060.1 (Arabidopsis thaliana), 3'ss of exon 8
------------------------------------------------------------------------------------cttcattcagtatttccttcccatgaatactgaatttaagaagtcctgcttcctcgtttatgttatgattttga----agcatatattattttttgattgacagGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACC---AGTCACTTCTGTTCCAAATCAAAATTCTGAGCTG
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gtttgtgatgcatcctgtgctgctcttctagatatatttcttctttaattctgttcactaacctatgtatggcccgatctctgaatttatt-ggtatttccttgccatt--ttttgcat--aaaaagttctgccagttt-tatatctctttagtttaactctaaaaactttaaatatttcattggcagGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTG
upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G10800.1 (Arabidopsis thaliana), 3'ss of exon 8
--------------------------------------------------cttcattcagtatttccttcccatgaatactgaatttaagaagtcctgcttcctc-gtttatgttatgattttgaagcatatattattttttgattgacagGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACCAGTCACTTCTGTTCCAAATCAAAATTCTGAGCTG
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gtctgtggcagttagttgctcctttgagattcattttatccctgaatgtgactgttgcgtcgtttcatttcaatacatttagatttagttcatgacggctgcttttgtttatatgcaactctaaaagctttcatt-tgttttaattggcagGGCTGCAATTTAATTTTTTCTGTTACATCGGGTCCACCAATGAATTCCGTTCCAAATCAAAATTCTGAGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgcttcctcgtttatgttatgattttgaagcatatattattttttgattgacagGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACCAGTCACTTCTGTTCCAAATCAAAATTCTGAGCTG
ttttgat putative branch site (score: 4)
ttatttttt CT-rich tract
tttatgttatgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttcattcagtatttccttcccatgaatactgaatttaagaagtcctgcttcctcgtttatgttatgattttgaagcatatattattttttgattgacagGGAGCCACAGTAATCTTGTCTGGTCCATCAGGTCCACCAGTCACTTCTGTTCCAAATCAAAATTCTGAGCTG
- -cattcag
- - - - - - - -ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagca