1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attttaaattcctaatgtattcacctttgatttactgtgagattagacttctgctttttagcatttaatatctctctttttttcttggttaatttttcagGGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATC
species | Vitis vinifera |
transcript | Vv04s0008g06480.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATAGCGCTTATATTGGATGCATGAAGTCGGGAGATGTGATAACAGAAGT GGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATCEST: gi|110424757|gb|EC991128.1|EC991128
genomic: GATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGCgtaatttatc ... aatttttcagGGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATC
EST: GATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGC GGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATC
genomic: GATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGCgtaatttatc ... aatttttcagGGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATC
gacttctgctttttagcatttaatatctctctttttttcttggttaatttttcagGGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATC
ggttaat putative branch site (score: 4)
tctctctttttttctt CT-rich tract
atttaatatctctctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttaaattcctaatgtattcacctttgatttactgtgagattagacttctgctttttagcatttaatatctctctttttttcttggttaatttttcagGGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - cctaatg
- - - - - - - - -tattcac
- - - - - - - - - - - - - - - - - - - - - - - -cttctgc