1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attttcatcctaagtaaacataatttgagattctgatttctttggtgggcaagactataacatcaatagatggccttatatggtttcattacttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTCCTGCACCAGAATCTGAGGGAAGCAGTAGCCATCGATCAGGCCGGTTAA
species | Vitis vinifera |
transcript | Vv04s0008g05480.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAG ATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTEST: gi|110711956|gb|EE089029.1|EE089029
genomic: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatatttta ... acttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCT
EST: TGCCNAGCTTCTATCAGGAACCCCCACCTCCTAA-GTGGATTTAA-GAAG ATAC-ACCAACAAGAGCCAAATCTCCCA-GCTTGGTCGAA-GAAAA-TTCTEST: gi|110732118|gb|EE107126.1|EE107126
genomic: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatatttta ... acttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCT
EST: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAG ATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTEST: gi|37183656|gb|CF603010.1|CF603010
genomic: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatatttta ... acttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCT
EST: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAG ATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTEST: gi|110372845|gb|EC937039.1|EC937039
genomic: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatatttta ... acttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCT
EST: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAG ATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTEST: gi|110713754|gb|EE089952.1|EE089952
genomic: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatatttta ... acttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCT
EST: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAA A-ACCACCAACAEST: gi|34547260|gb|CF515492.1|CF515492
genomic: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatatttta ... acttatgcagATACCACCAACA
EST: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAG ATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTEST: gi|110700552|gb|EE078724.1|EE078724
genomic: TGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatatttta ... acttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCT
EST: CCCCCACCTCCTAAAGTGGAATTAAAGAAG ATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCT
genomic: CCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatatttta ... acttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCT
tgggcaagactataacatcaatagatggccttatatggtttcattacttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTCCTGCACCAGAATCTGAGGGAAGCAGTAGCCATCGATCAGGCCGGTTAA
ctataac putative branch site (score: 3)
attacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttcatcctaagtaaacataatttgagattctgatttctttggtgggcaagactataacatcaatagatggccttatatggtttcattacttatgcagATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTCCTGCACCAGAATCTGAGGGAAGCAGTAGCCATCGATCAGGCCGGTTAA
- - tcatcct
- - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - tggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggcc