Sequence
atgc intronic sequence ATGC exonic sequence...gcgtgttgaagcacattttaaatcctgtgtggcttatcagtgccccggtttttagtgatttccttttttctcatccacattataaatgcatttattgcagGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAGTGGAACTTTGTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G366935_T09 (Zea mays), 3'ss of exon 7
---gcgtgttgaagcacattttaaatcctgtgtggcttatcagtgccccggtttttagtgatttccttttttctcatccacattataaatgcatttattgcagGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAGTGGAACTTTGTGTG
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tatactatttagtggtcatgccagctatcatgatagttgctaaaggtttc-tcttcaat--tctctaagtcattagttctgacgttggatatttctattgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAACTATGCTCT
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G094039_T06 (Zea mays), 3'ss of exon 6
--gcgtgttgaagcacattttaaatcctgtgtggcttatcagtgccccggtttttagtgatttccttttttctcatccacattataaatgcatttattgcagGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAGTGGAACTTTGTGTG
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tatttcgttagtggccatgtcagctatcatgatagttgctaaaggtttcttctccaat--tctgtatgtcattagttctgatgttggatgtttcttttgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCT
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G094039_T01 (Zea mays), 3'ss of exon 6
--gcgtgttgaagcacattttaaatcctgtgtggcttatcagtgccccggtttttagtgatttccttttttctcatccacattataaatgcatttattgcagGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAGTGGAACTTTG-TGTG----------------------------------
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tatttcgttagtggccatgtcagctatcatgatagttgctaaaggtttcttctccaat--tctgtatgtcattagttctgatgttggatgtttcttttgcagGTTTAGGCTGGAGTTTTCCATGTGATATTTGGAGTGTTGGCTGTATTCTTGTTGAGCTATGCTCTGTTAGATCTCTTCACACACTTTATTTTTCTAGTACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110378511|gb|EC943648.1|EC943648EST: TAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAG GTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAG
genomic: TAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGgtaactagtt ... tttattgcagGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cggtttttagtgatttccttttttctcatccacattataaatgcatttattgcagGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAGTGGAACTTTGTGTG
attataaatgcattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcgtgttgaagcacattttaaatcctgtgtggcttatcagtgccccggtttttagtgatttccttttttctcatccacattataaatgcatttattgcagGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAGTGGAACTTTGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - aagcaca
- - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - tgccccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgca