Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttcgatacctttacctttccctcctagaacccatcctcagttttttcatttattgaaaatacttgagggcttttcccaatctatttttctctaccatttgcagTGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTT

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G34380.1 (Glycine max), 3'ss of exon 9
gtaagttttcgatacctttacctttccctcctagaaccca--tcctcagttttttcatttattgaa--aatacttgagggcttttcccaatctatttttctctaccatttgcagTGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTT
||||||||   |       | |  |||||  || || |||  |  | |   | | |||||  | |   ||||  |||  | ||| | |   |||||||            | |||||||| |||||||| ||  |||| || |  |||||| |||| || ||||| ||||||||||||||||||||
gtaagtttcaca-------atcactcccttttataatccaagttgtaaaaatgtgcatttcctaagtgaatatatgattgttttcctcctactatttt------------gtagTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTT

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G11220.1 (Glycine max), 3'ss of exon 8
gtaagttttcgatacctttacctttccctcctagaacccatcctcagttttttcatttattgaaaatacttgagggcttttcccaatctatttttctctaccatttgcagTGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTT
        |   | ||   | |  || ||  || || |||     |||| |   |   | ||   ||   | || |  | |   | | | ||  || |||   | || |||||||| |||||||| ||  |||| || |  |||||| |||| || ||||| ||||||||||||||||||||
-------gtaagttccacaatcactctcttttataatcca-----agttctaaaa---aatgtgcatttctaagtggatatatgattgttttcctc-ctat--tctgtagTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTT

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagttttcgatacctttacctttccctcctagaacccatcctcagttttttcatttattgaaaatacttgagggcttttcccaatctatttttctctaccatttgcagTGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTT
            |   | |  ||| | |  ||  |    ||  | |||| |||  |  ||   |||||  |||             | | ||||  | |   ||   |||||| ||||||||||||||||||||||| |  || ||  |||  || || || || |||||||||||||| ||
-----------gtgagtct-tcttgcacatctgaatagtatgatgagttcttttgtaaatatcaaatatctgac------------tttgttttgatattgaat---cagTGACGTAAGAAACAACAGTTTGACTGGTAGTATACCTGAGACGATAGGAAATTGCACTGCCTTCCAGGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattgaaaatacttgagggcttttcccaatctatttttctctaccatttgcagTGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTT
                               tctatttttctctacc  CT-rich tract
                             aatctattttt  TA-rich tract