1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gttcttctgagggaaaaaaaaaagggcttcacaaagttgattagtgatatgttccatccctctcttttcatgtttcctaattccatttatttttgtgcagGGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAAGAGGAGATTGCGAATGGCTCTTGATGTG
species | Vitis vinifera |
transcript | Vv04s0008g01310.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAAG GGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAAEST: gi|34364117|gb|CF405702.1|CF405702
genomic: GCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAAGgtcaagacct ... ttttgtgcagGGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAA
EST: GCTGTTACTCGCCCCCC-AATCTCTCTATACTCACAGAGTTTCT-CCAAG GGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAAEST: gi|33402249|gb|CF207876.1|CF207876
genomic: GCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAAGgtcaagacct ... ttttgtgcagGGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAA
EST: TCTCTCTATACTCACAGAGTTTCTCCCAAG GGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAA
genomic: TCTCTCTATACTCACAGAGTTTCTCCCAAGgtcaagacct ... ttttgtgcagGGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAA
gatatgttccatccctctcttttcatgtttcctaattccatttatttttgtgcagGGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAAGAGGAGATTGCGAATGGCTCTTGATGTG
tcctaat putative branch site (score: 2)
ttccatttattttt CT-rich tract
taattccatttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttctgagggaaaaaaaaaagggcttcacaaagttgattagtgatatgttccatccctctcttttcatgtttcctaattccatttatttttgtgcagGGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAAGAGGAGATTGCGAATGGCTCTTGATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- tcttctg
- - - - -agggaaa
- - - - - - -aaaaaaa
- - - - - - - - - - - - - cttcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattta