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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacactttccttccattattagaatctggttccacttgtgttatccatataactcagcattgtgtggtgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATATAACCTGGTTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTA

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877324|gb|DT026379.1|DT026379
EST:     TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
EST: gi|110361720|gb|EC925214.1|EC925214
EST:     TCTGCTTAAAGCATGCCCAATCCCTAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
EST: gi|110390273|gb|EC955175.1|EC955175
EST:     TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
EST: gi|110384184|gb|EC948603.1|EC948603
EST:     TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
EST: gi|110385950|gb|EC950512.1|EC950512
EST:     TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctggttccacttgtgttatccatataactcagcattgtgtggtgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATATAACCTGGTTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTA
                        atataac  putative branch site (score: 3)
 tgtctttt  putative PPT
 atataact  TA-rich tract