1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttcttcccatcatatgattaatgggattaatctgttttctgacacatagctatgtttggtttgatattccttgcatcaaatggatttgacattttgcagGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAATTGGTCTCAACTTTGCCCCACTTGCAAG
species | Vitis vinifera |
transcript | Vv03s0088g01260.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGATGCAGAG GATCCACTGTTGAATATCAATCTCAACAATTTCTCCATATGGACGGGAAATEST: gi|351029081|gb|FQ435281.1|FQ435281
genomic: CGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGATGCAGAGgtatgctata ... cattttgcagGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAAT
EST: CGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGATGCAGAG GATCCACTGTTGAATATCAATCTCAACAATTTCTCCATATGGACGGGAAATEST: gi|351030865|gb|FQ438901.1|FQ438901
genomic: CGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGATGCAGAGgtatgctata ... cattttgcagGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAAT
EST: CGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGATGCAGAG GATCCACTGTTGAATATCAATCTCAACAATTTCTCCATATGGACGGGAAATEST: gi|351018912|gb|FQ426411.1|FQ426411
genomic: CGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGATGCAGAGgtatgctata ... cattttgcagGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAAT
EST: CGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGATGCAGAG GATCCACTGTTGAATATCAATCTCAACAATTTCTCCATATGGACGGGAAATEST: gi|161717421|gb|FC068873.1|FC068873
genomic: CGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGATGCAGAGgtatgctata ... cattttgcagGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAAT
EST: CGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGATGCAGAG GATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAAT
genomic: CGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGATGCAGAGgtatgctata ... cattttgcagGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAAT
catagctatgtttggtttgatattccttgcatcaaatggatttgacattttgcagGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAATTGGTCTCAACTTTGCCCCACTTGCAAG
atttgac putative branch site (score: 4)
tttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttcccatcatatgattaatgggattaatctgttttctgacacatagctatgtttggtttgatattccttgcatcaaatggatttgacattttgcagGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAATTGGTCTCAACTTTGCCCCACTTGCAAG
- tcttccc
- - - - - - - - - - - - - - - - - - - -ctgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatcaa